View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9491_high_3 (Length: 228)
Name: NF9491_high_3
Description: NF9491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9491_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 15603076 - 15602870
Alignment:
| Q |
20 |
cagcgtcaccacaaaaaacaaatcaaatgggcttgttcgtattctttcttttctgaagcaatgagaagcttgcttccctgacctctagaaacgacattgt |
119 |
Q |
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| T |
15603076 |
cagcgtcaccacaaaaaacaaatcaaatgggcttgttcggattctttcttttctgaagcaatgagaagcttgcttccctgacctctagaaacgacactgt |
15602977 |
T |
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| Q |
120 |
agcaaggaacagtgaaaacgcagcagtaaaaacaaggggtaaagttggaaacgaatttggggtgtctgcaaacgtgattctaagaaacgcagaagcttga |
219 |
Q |
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| T |
15602976 |
agcaaggaacattgaaaacgcagtagtaaaaacaaagggtaaagttggaaacgaatttggggtgtctgcaa--gtgattccaagaaacgtagaagcttga |
15602879 |
T |
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| Q |
220 |
aattgtagc |
228 |
Q |
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| T |
15602878 |
aattgtagc |
15602870 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 42516395 - 42516489
Alignment:
| Q |
128 |
acagtgaaaacgcagcagtaaaaacaaggggtaaagttggaaacgaatttggggtgtctgcaaacgtgattctaagaaacgcagaagcttgaaattg |
224 |
Q |
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|||| ||||||||| ||| ||||||| |||||||| |||||| ||||||||| |||||| | ||||||||| ||||||||||||||| ||||| |
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| T |
42516395 |
acagggaaaacgcatcagaaaaaaca-ggggtaaaactggaaataaatttggggcttctgcataattgattctaa-aaacgcagaagcttggaattg |
42516489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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