View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9491_low_1 (Length: 666)
Name: NF9491_low_1
Description: NF9491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9491_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 10 - 651
Target Start/End: Complemental strand, 4610274 - 4609633
Alignment:
| Q |
10 |
ttggtgttgatgatgatttctacaatcaggaactgagattctaccaggaggaataggtgatgaaagtgcatgaaaaggtggtaattcttctccacattca |
109 |
Q |
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| T |
4610274 |
ttggtgttgatgatgatttctacaatcaggaactgagattctaccaggaggaataggtgatgaaagtgcatgaaaaggtggtaattcttctccacattca |
4610175 |
T |
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| Q |
110 |
gacattgctgaggaaaatctcctagattttgatctagttttgcatgtgtcaatttcaacaatctttggactttgatcatcatatccattcaatgatgttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4610174 |
gacattgctgaggaaaatctcctagattttgatctagttttgcatgtgtcaatttcaacaatctttggactttgatcatcatatccattcaatgatgttt |
4610075 |
T |
|
| Q |
210 |
cataagatgttggtagtcttttgctgtggaattcgctccttgtttcatcgtatcgttcctaagcaagtaacaaaaggaaacataatagcaaacaaattag |
309 |
Q |
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| T |
4610074 |
cataagatgttggtagtcttttgctgtggaattcgctccttgtttcatcgtatcgttcctaagcaagtaacaaaaggaaacataatagcaaacaaattag |
4609975 |
T |
|
| Q |
310 |
acagtacttgttaattgattcatgcatattcagattggcggtgagtttgacaaaatcacggtcaaaactgacagcggatcctaccatatacatgtttggt |
409 |
Q |
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| T |
4609974 |
acactacttgttaattgattcatgcatattcagattggcggtgagtttgacaaaatcacggtccaaactgactgcggatcctaacatatacatgtttggt |
4609875 |
T |
|
| Q |
410 |
atgcaatgcaatgcagaatgcaggataaggaaaattaagttttttaccagtgattttcttgcaataatttcaggtagaaatctactttctttgctcatgg |
509 |
Q |
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| T |
4609874 |
atgcaatgcaatgcagaatgcaggattaggaaaattaagttttttaccagtgattttcttgcaataatttcaggtagaaatctactttctttgctcatgg |
4609775 |
T |
|
| Q |
510 |
atctacgagctctctgtgttcggacagaagtttgagctctaaatagagcttgcatactgtgaagagttgcggcagctctttttctaacaagatagcctct |
609 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4609774 |
atctgcgagctctctgtgttcggacagaagtttgagctctaaatagagcttgcatactgtgaagagttgcagcagctctttttctaacaagatagcctct |
4609675 |
T |
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| Q |
610 |
gacaagagcttgtatcttaaccaatcctttcaatgctctaag |
651 |
Q |
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| T |
4609674 |
aacaagagcttgtatcttaaccaatcctttcaatgctctaag |
4609633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 541 - 649
Target Start/End: Original strand, 43314727 - 43314835
Alignment:
| Q |
541 |
ttgagctctaaatagagcttgcatactgtgaagagttgcggcagctctttttctaacaagatagcctctgacaagagcttgtatcttaaccaatcctttc |
640 |
Q |
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||||||||| | ||||||||||||||| ||||| ||||| ||| ||||||||||||| || | ||||| ||||||||||| ||| ||||||||||||| |
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| T |
43314727 |
ttgagctctcattagagcttgcatactatgaagtgttgctgcaactctttttctaactaggaaccctctaacaagagcttggatcctaaccaatcctttt |
43314826 |
T |
|
| Q |
641 |
aatgctcta |
649 |
Q |
| |
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| ||||||| |
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| T |
43314827 |
agtgctcta |
43314835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 371
Target Start/End: Original strand, 20960863 - 20960892
Alignment:
| Q |
342 |
gattggcggtgagtttgacaaaatcacggt |
371 |
Q |
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| T |
20960863 |
gattggcggtgagtttgacaaaatcacggt |
20960892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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