View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9491_low_3 (Length: 383)
Name: NF9491_low_3
Description: NF9491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9491_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 25 - 367
Target Start/End: Complemental strand, 2019920 - 2019578
Alignment:
| Q |
25 |
ctagatccacaaaaactatcaaaatagtgcatatcagctatcaaatttaaatttatcatgcaacaaccgtggtctgtgtcaaagtgattacaataaatta |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019920 |
ctagatccacaaaaactatcaaaatagtgcatatcagctatcaaatttaa-tttatcatgcaacaaccgtggtctgtgtcaaagtgattacaataaatta |
2019822 |
T |
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| Q |
125 |
atgatcataactgcatttgtgatcataaccataatnnnnnnn-tcataaaaagcctcacaaagctgtcggcctacgaaggtgttgggccgactctaagtc |
223 |
Q |
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| T |
2019821 |
atgatcataactgcatttgtgatcataaccataataaaaaaaatcataaaaagcctcacaaagctgtcggcctacgaaggtgttgggccgactctaagtc |
2019722 |
T |
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| Q |
224 |
aaagtgaagattacatgtcgcagagcccattggacacaaagataatgtttccaacattggatgctttagatcaatgtctaaagtcgtgtgaattgtcata |
323 |
Q |
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| T |
2019721 |
aaagtgaagattacatgtcgcagagcccattggacacaaagataatgtttccaacattggatgctttagatcaatgtctaaagttgtgtgaattgtcata |
2019622 |
T |
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| Q |
324 |
ttttgaagtactttagaattctgcatgatatacttagcaaattg |
367 |
Q |
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| T |
2019621 |
ttttgaagtactttagaattctgcatgatatacttagcaaattg |
2019578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 224 - 364
Target Start/End: Complemental strand, 2016191 - 2016051
Alignment:
| Q |
224 |
aaagtgaagattacatgtcgcagagcccattggacacaaagataatgtttccaacattggatgctttagatcaatgtctaaagtcgtgtgaattgtcata |
323 |
Q |
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| T |
2016191 |
aaagtgaagattacatgtggcagagccccttggacacagagagaaagtttccaacattggctgctttagatcaatgtctaaagttgtgtgaattgtcata |
2016092 |
T |
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| Q |
324 |
ttttgaagtactttagaattctgcatgatatacttagcaaa |
364 |
Q |
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| T |
2016091 |
ttttgtagtacttttgaagtctgcaaaatatatttagcaaa |
2016051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 219 - 367
Target Start/End: Complemental strand, 2013018 - 2012870
Alignment:
| Q |
219 |
aagtcaaagtgaagattacatgtcgcagagcccattggacacaaagataatgtttccaacattggatgctttagatcaatgtctaaagtcgtgtgaattg |
318 |
Q |
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|||||||||||||| |||||||||||||| ||| ||||||||||||| || ||||||||||||||||||| | ||||||||| |||||| | ||||||| |
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| T |
2013018 |
aagtcaaagtgaagtttacatgtcgcagatccccttggacacaaagagaaagtttccaacattggatgctctggatcaatgtttaaagtactctgaattg |
2012919 |
T |
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| Q |
319 |
tcatattttgaagtactttagaattctgcatgatatacttagcaaattg |
367 |
Q |
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| T |
2012918 |
tcatattttgtagtacttttgacttctgcataatgtatttagcaaattg |
2012870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 349
Target Start/End: Complemental strand, 2014423 - 2014300
Alignment:
| Q |
221 |
gtcaaagtgaagattacatgtcgcagagcccattggacacaaagataatgtttccaacattggatgctttagatcaatgtctaaagtcgtgtgaattgtc |
320 |
Q |
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| T |
2014423 |
gtcaaagtgaagattacatgtctcagaaccccttggacacagagaaa--gtttccaacattggatactt---atcaatgtctaaagcagtgtgaattgtc |
2014329 |
T |
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| Q |
321 |
atattttgaagtactttagaattctgcat |
349 |
Q |
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|||||||| |||||||| || |||||||| |
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| T |
2014328 |
atattttgtagtactttcgagttctgcat |
2014300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 2006707 - 2006649
Alignment:
| Q |
309 |
gtgtgaattgtcatattttgaagtactttagaattctgcatgatatacttagcaaattg |
367 |
Q |
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| T |
2006707 |
gtgtgcattgtcatattttgcagtacttttgaattttgcatgatatatttagcaaattg |
2006649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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