View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9492_low_10 (Length: 280)

Name: NF9492_low_10
Description: NF9492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9492_low_10
NF9492_low_10
[»] chr6 (12 HSPs)
chr6 (5-176)||(17784260-17784431)
chr6 (3-89)||(5064387-5064473)
chr6 (12-67)||(8427261-8427316)
chr6 (3-88)||(13480455-13480540)
chr6 (34-89)||(20561011-20561065)
chr6 (34-69)||(32337833-32337868)
chr6 (3-69)||(13480260-13480326)
chr6 (3-69)||(23291796-23291862)
chr6 (3-61)||(33401116-33401174)
chr6 (12-69)||(5064601-5064658)
chr6 (13-54)||(31386861-31386902)
chr6 (22-54)||(1066420-1066452)
[»] chr8 (29 HSPs)
chr8 (3-180)||(38599016-38599193)
chr8 (12-211)||(33497456-33497655)
chr8 (5-176)||(33497070-33497241)
chr8 (5-211)||(24378837-24379042)
chr8 (3-89)||(7393107-7393193)
chr8 (77-211)||(24377718-24377852)
chr8 (3-69)||(4970177-4970243)
chr8 (3-73)||(24377233-24377303)
chr8 (3-69)||(25288058-25288124)
chr8 (3-88)||(7392260-7392345)
chr8 (12-99)||(1231587-1231674)
chr8 (3-89)||(11478391-11478477)
chr8 (3-69)||(20096072-20096138)
chr8 (3-69)||(40525559-40525625)
chr8 (12-69)||(40422221-40422278)
chr8 (3-54)||(9632380-9632431)
chr8 (16-54)||(13566475-13566513)
chr8 (12-54)||(23514082-23514124)
chr8 (3-69)||(25287844-25287910)
chr8 (34-88)||(29190243-29190297)
chr8 (34-88)||(37342865-37342919)
chr8 (3-69)||(41767665-41767731)
chr8 (3-69)||(41773596-41773662)
chr8 (34-88)||(43866958-43867012)
chr8 (12-69)||(547701-547758)
chr8 (12-69)||(29190425-29190482)
chr8 (5-97)||(4462179-4462271)
chr8 (7-99)||(29574798-29574890)
chr8 (12-88)||(29575848-29575924)
[»] chr2 (26 HSPs)
chr2 (3-211)||(20101822-20102029)
chr2 (12-167)||(23206292-23206447)
chr2 (12-167)||(23677896-23678051)
chr2 (12-191)||(23183660-23183838)
chr2 (12-191)||(23594917-23595095)
chr2 (3-211)||(20102985-20103192)
chr2 (3-67)||(19620777-19620841)
chr2 (12-69)||(33882856-33882911)
chr2 (3-88)||(16367015-16367100)
chr2 (3-99)||(24387403-24387499)
chr2 (12-54)||(28599488-28599530)
chr2 (12-88)||(17366869-17366945)
chr2 (34-89)||(1150183-1150238)
chr2 (3-54)||(9694023-9694074)
chr2 (3-70)||(13646132-13646199)
chr2 (3-70)||(13652074-13652141)
chr2 (1-88)||(32519402-32519489)
chr2 (14-69)||(33881638-33881693)
chr2 (12-54)||(5608875-5608917)
chr2 (3-69)||(16367229-16367295)
chr2 (12-58)||(43681917-43681963)
chr2 (12-53)||(19619587-19619628)
chr2 (14-54)||(4375612-4375652)
chr2 (12-88)||(9693803-9693879)
chr2 (34-70)||(19607000-19607036)
chr2 (3-63)||(25623340-25623400)
[»] scaffold0182 (2 HSPs)
scaffold0182 (14-211)||(13197-13394)
scaffold0182 (3-146)||(14283-14425)
[»] chr3 (15 HSPs)
chr3 (3-179)||(22736562-22736738)
chr3 (3-179)||(44476101-44476277)
chr3 (12-179)||(22735420-22735587)
chr3 (12-179)||(44481825-44481992)
chr3 (3-88)||(10998120-10998205)
chr3 (12-69)||(22129067-22129124)
chr3 (12-69)||(24576561-24576618)
chr3 (34-88)||(11312818-11312872)
chr3 (12-86)||(55036918-55036992)
chr3 (3-88)||(1741439-1741524)
chr3 (28-89)||(21300210-21300271)
chr3 (1-69)||(30804114-30804182)
chr3 (12-54)||(28310629-28310671)
chr3 (3-69)||(40256926-40256992)
chr3 (22-54)||(38642941-38642973)
[»] chr7 (20 HSPs)
chr7 (3-179)||(37284161-37284337)
chr7 (3-211)||(37289150-37289358)
chr7 (3-69)||(12929339-12929405)
chr7 (1-67)||(7159197-7159262)
chr7 (3-69)||(12930824-12930890)
chr7 (12-69)||(26830007-26830064)
chr7 (12-69)||(27558118-27558175)
chr7 (3-69)||(12929520-12929586)
chr7 (3-69)||(12931004-12931070)
chr7 (34-88)||(37563437-37563491)
chr7 (3-88)||(43937946-43938031)
chr7 (3-69)||(43938160-43938226)
chr7 (12-70)||(47738978-47739036)
chr7 (28-69)||(23191120-23191161)
chr7 (5-53)||(7158285-7158333)
chr7 (2-54)||(19980001-19980053)
chr7 (22-54)||(27557919-27557951)
chr7 (12-88)||(31694532-31694608)
chr7 (7-99)||(31695566-31695658)
chr7 (3-67)||(37563622-37563686)
[»] chr1 (35 HSPs)
chr1 (3-179)||(32619436-32619612)
chr1 (3-179)||(32622228-32622404)
chr1 (13-182)||(51935068-51935237)
chr1 (7-92)||(2828249-2828334)
chr1 (3-138)||(32238751-32238888)
chr1 (5-80)||(6344309-6344384)
chr1 (12-69)||(52563712-52563769)
chr1 (12-67)||(2829523-2829578)
chr1 (12-88)||(5183567-5183643)
chr1 (3-54)||(10019654-10019705)
chr1 (3-54)||(46545012-46545063)
chr1 (3-69)||(6345619-6345685)
chr1 (34-88)||(29043002-29043056)
chr1 (3-67)||(28534780-28534845)
chr1 (12-69)||(29980904-29980961)
chr1 (12-69)||(30830397-30830454)
chr1 (12-88)||(1047451-1047527)
chr1 (12-87)||(25414905-25414980)
chr1 (3-69)||(1040350-1040416)
chr1 (3-69)||(1047256-1047322)
chr1 (34-88)||(2953547-2953601)
chr1 (3-69)||(2953730-2953796)
chr1 (15-69)||(5183772-5183826)
chr1 (3-69)||(19755671-19755737)
chr1 (34-84)||(26953184-26953234)
chr1 (12-54)||(35312257-35312299)
chr1 (3-69)||(46849924-46849990)
chr1 (12-69)||(739280-739337)
chr1 (12-69)||(33347682-33347739)
chr1 (12-69)||(37152804-37152861)
chr1 (12-69)||(49002937-49002994)
chr1 (12-69)||(49003141-49003198)
chr1 (12-69)||(52564933-52564990)
chr1 (12-88)||(37152599-37152675)
chr1 (3-63)||(49093093-49093153)
[»] chr5 (22 HSPs)
chr5 (3-89)||(14744692-14744778)
chr5 (3-179)||(21977889-21978065)
chr5 (12-179)||(21972150-21972317)
chr5 (12-192)||(8654168-8654349)
chr5 (3-67)||(39402132-39402196)
chr5 (23-88)||(8323303-8323368)
chr5 (12-88)||(13064656-13064732)
chr5 (13-108)||(8673701-8673796)
chr5 (3-54)||(21260917-21260968)
chr5 (34-88)||(20704960-20705014)
chr5 (3-69)||(25253138-25253204)
chr5 (3-69)||(25316928-25316994)
chr5 (3-69)||(37945046-37945112)
chr5 (3-88)||(25253333-25253418)
chr5 (3-88)||(25317124-25317209)
chr5 (34-88)||(12991035-12991089)
chr5 (3-69)||(14745500-14745566)
chr5 (12-54)||(22024151-22024193)
chr5 (3-69)||(32052490-32052556)
chr5 (3-69)||(33735579-33735645)
chr5 (28-69)||(7015585-7015626)
chr5 (3-63)||(20856984-20857044)
[»] scaffold0018 (1 HSPs)
scaffold0018 (3-179)||(73161-73337)
[»] chr4 (18 HSPs)
chr4 (2-179)||(55012961-55013138)
chr4 (5-92)||(54590197-54590284)
chr4 (4-90)||(53477041-53477127)
chr4 (3-67)||(54591560-54591626)
chr4 (12-88)||(47862399-47862475)
chr4 (12-54)||(489465-489507)
chr4 (12-54)||(515257-515299)
chr4 (3-69)||(19916708-19916774)
chr4 (1-63)||(23455677-23455739)
chr4 (1-54)||(32846412-32846465)
chr4 (12-89)||(47981882-47981959)
chr4 (14-54)||(8286995-8287035)
chr4 (12-54)||(10128767-10128809)
chr4 (34-88)||(13872152-13872206)
chr4 (3-69)||(20086489-20086555)
chr4 (34-88)||(33294390-33294444)
chr4 (28-69)||(26601342-26601383)
chr4 (33-69)||(34238736-34238772)
[»] scaffold0009 (2 HSPs)
scaffold0009 (12-92)||(261062-261142)
scaffold0009 (3-67)||(262425-262489)
[»] scaffold1493 (2 HSPs)
scaffold1493 (3-69)||(645-711)
scaffold1493 (3-69)||(859-925)
[»] scaffold0279 (2 HSPs)
scaffold0279 (12-69)||(10914-10971)
scaffold0279 (22-54)||(11138-11170)
[»] scaffold0206 (1 HSPs)
scaffold0206 (3-69)||(10377-10443)
[»] scaffold0233 (1 HSPs)
scaffold0233 (14-68)||(8699-8753)
[»] scaffold0321 (1 HSPs)
scaffold0321 (36-89)||(10908-10961)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 17784431 - 17784260
Alignment:
Q  5 tgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagataca 104  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||| ||  |||||||||||||||||   || |||||||||||||||||||||||      
T  17784431 tgaacttactaatcctcccattttgcccctgcaaatattaatcattttaaaattcgtcctaattaaaaaaaattactgaggtggatggtaattagatatg 17784332  T
Q  105 tggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 176  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17784331 tggcaactagcgactggctttttgtcaggacacgtcagcagatggcaattgcaatgacatttttgcccttaa 17784260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 5064387 - 5064473
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 89  Q
    |||||| | ||||||||||||| ||||||  |||||||||||||||||||| |||| |||||||||| |  ||||||||||||||||    
T  5064387 cctgaagttactaatcctcccaatttgcccctgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgga 5064473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 8427261 - 8427316
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaat 67  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||||| |||||||    
T  8427261 actaatcctcccattttgcccctgcaaatattaatcagttgaattttcatcctaat 8427316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 13480540 - 13480455
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||| | ||||||||| ||| | ||||  | |||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  13480540 cctgaagttactaatccttccaatctgcccctacaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 13480455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 20561011 - 20561065
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 89  Q
    |||||||||||||||||||| |||| ||||||||| | | ||||||||||||||||    
T  20561011 tgcaaatattaatcatttgacttttggtcctaatt-atattttttgctgaggtgga 20561065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 32337868 - 32337833
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||||||||||||||||| |||||||||||||||    
T  32337868 tgcaaatattaatcatttgacttttcgtcctaatta 32337833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 13480260 - 13480326
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  13480260 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 13480326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 23291796 - 23291862
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  23291796 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 23291862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 33401174 - 33401116
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgt 61  Q
    |||||||| ||||||||||||||||||||  || |||  |||||||||||||| |||||    
T  33401174 cctgaacttactaatcctcccattttgcccctgtaaaagttaatcatttgaatattcgt 33401116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 5064658 - 5064601
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  5064658 actaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 5064601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 31386861 - 31386902
Alignment:
Q  13 ctaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    |||||||| ||||||||| | |||||||||||||||||||||    
T  31386861 ctaatccttccattttgcaattgcaaatattaatcatttgaa 31386902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 1066452 - 1066420
Alignment:
Q  22 ccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||||||| |||||||||||||||||||||    
T  1066452 ccattttgccattgcaaatattaatcatttgaa 1066420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 38599016 - 38599193
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagata 102  Q
    |||||||| |||||||||| |||||||||  |||||||||||||||||||||  |||||||||||||||||  | |||||||||||||||||||||||||    
T  38599016 cctgaacttactaatcctctcattttgcccctgcaaatattaatcatttgaaaattcgtcctaattaaaaaaatatgctgaggtggatggtaattagata 38599115  T
Q  103 catggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatgaa 180  Q
      |||||| | | |||||| ||||||||||||||  | |||||| ||||| ||||||||||||||| |||||||||||    
T  38599116 agtggcaaatggtgactgggtttttgtcaggacatgtaagcagaaggcaaatgcaatgacatttttacccttaatgaa 38599193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 33497655 - 33497456
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaac 111  Q
    ||||||||||||||||||||  ||||| || ||||||||||||  ||||||||||||| |||  |||||||||||||| ||||||||||||| |||||      
T  33497655 actaatcctcccattttgcccctgcaattactaatcatttgaaaattcgtcctaattacaaaaatttgctgaggtggagggtaattagatacgtggcatt 33497556  T
Q  112 tagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcgtgcaaagactattttaccc 211  Q
    | | || |||  |||||||||||||| |||||||||||| |  | ||||||||||||||||||||||| ||  |||||||| |||| ||| |||||||||    
T  33497555 ttgtgaatggagttttgtcaggacacgtcagcagatggcgagggaaatgacatttttgcccttaatgagtctggactcgcgcgcaatgaccattttaccc 33497456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 33497070 - 33497241
Alignment:
Q  5 tgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagataca 104  Q
    |||||| ||||||||| ||||||||||  ||||| || ||||||||||||  ||||||||||||| |||  |||||||||||||| |||||||||||||     
T  33497070 tgaacttactaatccttccattttgcccttgcaattactaatcatttgaaaattcgtcctaattacaaaaatttgctgaggtggagggtaattagatacg 33497169  T
Q  105 tggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 176  Q
    || ||  | | || |||  |||||||||||||| |||||||||||| |  | ||||||||||||||||||||    
T  33497170 tgacatttggtgaatggagttttgtcaggacacgtcagcagatggcgagggaaatgacatttttgcccttaa 33497241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 24379042 - 24378837
Alignment:
Q  5 tgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagataca 104  Q
    |||||| ||||||||||| ||||||||  ||||||||  || ||||| ||  |||||||||||||||||   ||| |||||||||||  ||||||||||     
T  24379042 tgaacttactaatcctcctattttgcccctgcaaataaaaagcattttaaaattcgtcctaattaaaaa-aattgttgaggtggatgaaaattagatacg 24378944  T
Q  105 tggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcgtgcaaagactat 204  Q
    ||||||||   |||||| | || || ||||||| | |||| | | |  ||||||||||||||||||||||| |||| || |||||| | | |||||| ||    
T  24378943 tggcaactgttgactgggtcttcgttaggacacgtaagcataagcctcttgcaatgacatttttgcccttactgaagcaggactcgtgcgtaaagaccat 24378844  T
Q  205 tttaccc 211  Q
    |||||||    
T  24378843 tttaccc 24378837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 7393193 - 7393107
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 89  Q
    |||||||| |||||||||||||||||  |  ||||||||||||||||||||| ||| |||||||| | || | ||||||||||||||    
T  7393193 cctgaacttactaatcctcccattttatccctgcaaatattaatcatttgaaatttagtcctaatcacaattgtttgctgaggtgga 7393107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 211
Target Start/End: Original strand, 24377718 - 24377852
Alignment:
Q  77 ttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 176  Q
    |||||||||||||||  |||||||||| |||||||    |||||| | || |||||||||| | |||||| | |  |||||||||||||||||||||||     
T  24377718 ttgctgaggtggatgaaaattagatacgtggcaaccgttgactgggtcttcgtcaggacacctaagcagaagcctcttgcaatgacatttttgcccttac 24377817  T
Q  177 tgaatcaagactcgcgtgcaaagactattttaccc 211  Q
    |||| || |||||||  | |||||| |||||||||    
T  24377818 tgaagcaggactcgcacgtaaagaccattttaccc 24377852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 4970177 - 4970243
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||||| ||||||||| ||||||||||  |||||||||||| |||||||| ||| ||||||||||    
T  4970177 cctgaacttactaatccttccattttgcccctgcaaatattaagcatttgaaatttagtcctaatta 4970243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 24377233 - 24377303
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaa 73  Q
    |||||||| ||||||||||||||||| ||  |||||||||||| ||||| ||  |||||||||||||||||    
T  24377233 cctgaacttactaatcctcccatttttcccctgcaaatattaagcatttcaaaattcgtcctaattaaaaa 24377303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 25288124 - 25288058
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||||| |||||||||| |||||||||  |||||||||||||||||||| |||| || |||||||    
T  25288124 cctgaacttactaatcctctcattttgcccctgcaaatattaatcatttgacttttggttctaatta 25288058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 7392260 - 7392345
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||| |||||||||||||||||  |  ||||||||||||||||||||| ||| |||||||| |  | | |||||||||||||    
T  7392260 cctgaacttactaatcctcccattttatccctgcaaatattaatcatttgaaatttagtcctaatcacgattgtttgctgaggtgg 7392345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 1231587 - 1231674
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattag 99  Q
    ||||||||||||||||| ||  || ||| ||||||||||||||  ||||||||||||| |  |||||||||| |||||| || |||||    
T  1231587 actaatcctcccattttacccctgtaaaaattaatcatttgaaaattcgtcctaattacatttttttgctgacgtggatagtgattag 1231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 11478477 - 11478391
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 89  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    ||||||||||||||||    
T  11478477 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgatttttggtcctaattaggtttttttgctgaggtgga 11478391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 20096072 - 20096138
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| ||||||  |||||||||||||||||||| |||| ||||||||||    
T  20096072 cctgaagttactaatccttccaatttgcctctgcaaatattaatcatttgacttttggtcctaatta 20096138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 40525559 - 40525625
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||| |||||||||||||||||||| |||| ||||||||||    
T  40525559 cctgaagttactaatccttccaatctgccactgcaaatattaatcatttgacttttggtcctaatta 40525625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 40422221 - 40422278
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||| | ||||| |||||||||||||||||||| |||| ||||||||||    
T  40422221 actaatccttccaatctgccactgcaaatattaatcatttgacttttggtcctaatta 40422278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 9632380 - 9632431
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    |||||| | ||||||||| |||||||| || |||||||||||||||||||||    
T  9632380 cctgaagttactaatccttccattttgtcattgcaaatattaatcatttgaa 9632431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 13566475 - 13566513
Alignment:
Q  16 atcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  13566475 atccttccattttgccattgcaaatattaatcatttgaa 13566513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 23514082 - 23514124
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    |||||||||  |||||||||| |||||||||||||||||||||    
T  23514082 actaatcctttcattttgccattgcaaatattaatcatttgaa 23514124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 25287844 - 25287910
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  25287844 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 25287910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 29190243 - 29190297
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||||||||||||||| |||| |||||||||| |  ||||| |||||||||    
T  29190243 tgcaaatattaatcatttgacttttggtcctaattagatttttttcctgaggtgg 29190297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 37342865 - 37342919
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||||||||||||||| |||| ||||||||||    |||||||||||||||    
T  37342865 tgcaaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtgg 37342919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 41767665 - 41767731
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||| ||| ||||||||||||| ||||||| ||||||||||||||| || || ||| |||| |||||    
T  41767665 cctgtacttactaatcctcccaatttgccactgcaaatattaatcacttaaaatttggtccaaatta 41767731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 41773662 - 41773596
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||| ||| ||||||||||||| ||||||| ||||||||||||||| || || ||| |||| |||||    
T  41773662 cctgtacttactaatcctcccaatttgccactgcaaatattaatcacttaaaatttggtccaaatta 41773596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 43867012 - 43866958
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||||||||||||||| |||| ||||||||||    |||||||||||||||    
T  43867012 tgcaaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtgg 43866958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 547758 - 547701
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||| | ||||| | |||||||||||||||||| |||| ||||||||||    
T  547758 actaatccttccaatctgccactacaaatattaatcatttgacttttggtcctaatta 547701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 29190482 - 29190425
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  29190482 actaatccttccaatctgcccctgcaaatattaatcatttgacttttagtcctaatta 29190425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 4462179 - 4462271
Alignment:
Q  5 tgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaatt 97  Q
    |||||| ||||||||||||||| |  |  ||||| | ||||||| ||||| ||| |||||||| | |  |||||||||||||||| |||||||    
T  4462179 tgaacttactaatcctcccattctttccctgcaattgttaatcacttgaaatttggtcctaatcacatttttttgctgaggtggagggtaatt 4462271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 29574798 - 29574890
Alignment:
Q  7 aactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattag 99  Q
    |||| ||||||||| |||||||  |  ||||| | ||||||| ||||| ||| |||||||| | |  |||||||||||||||| |||||||||    
T  29574798 aacttactaatccttccattttttccctgcaattgttaatcacttgaaatttggtcctaatcacatttttttgctgaggtggagggtaattag 29574890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 29575924 - 29575848
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    ||||||||||||||| |  | |||||| | ||||||| ||||| ||| |||||||||| |  |||||||||||||||    
T  29575924 actaatcctcccattctttccatgcaattgttaatcacttgaaatttggtcctaattacatttttttgctgaggtgg 29575848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 20101822 - 20102029
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagata 102  Q
    ||||| || ||||||||||||||||||||  ||||| || ||||||||||||  |||||||||||||||||  || ||||||||||||| ||||||||||    
T  20101822 cctgagcttactaatcctcccattttgcccctgcaattaataatcatttgaaaattcgtcctaattaaaaaaatt-gctgaggtggatgctaattagata 20101920  T
Q  103 catggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcgtgcaaagact 202  Q
    | ||||| || |||| ||| ||||||||||||||| |||||||||||||   | ||||||||||||||||||||| ||||  |||| |||  ||| |||     
T  20101921 cgtggcatctggcgaatggttttttgtcaggacacgtcagcagatggcatgggaaatgacatttttgcccttaataaatctggacttgcgcacaatgacc 20102020  T
Q  203 attttaccc 211  Q
    |||||||||    
T  20102021 attttaccc 20102029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 23206447 - 23206292
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaac 111  Q
    |||||||||| |||||||||| |||||||||||| |||| |||  |||||||||||||||||  |||||| | ||||||||||||||||||  |||| ||    
T  23206447 actaatcctctcattttgccactgcaaatattaagcattcgaaaattcgtcctaattaaaaaaatttgcttacgtggatggtaattagatatgtggcgac 23206348  T
Q  112 tagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttt 167  Q
    | | |||||| ||||||||||||||| | |||||| ||||||||||||||||||||    
T  23206347 tggtgactgggtttttgtcaggacacgtaagcagaaggcaattgcaatgacatttt 23206292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 23678051 - 23677896
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaac 111  Q
    |||||||||| |||||||||| |||||||||||| |||| |||  |||||||||||||||||  |||||| | ||||||||||||||||||  |||| ||    
T  23678051 actaatcctctcattttgccactgcaaatattaagcattcgaaaattcgtcctaattaaaaaaatttgcttacgtggatggtaattagatatgtggcgac 23677952  T
Q  112 tagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttt 167  Q
    | | |||||| ||||||||||||||| | |||||| ||||||||||||||||||||    
T  23677951 tggtgactgggtttttgtcaggacacgtaagcagaaggcaattgcaatgacatttt 23677896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 23183660 - 23183838
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaac 111  Q
    ||||||||||| ||||||||| |||||||||||| ||||| ||  |||||||||||||||  |||||||||||||||||||||| ||| ||| ||||  |    
T  23183660 actaatcctcctattttgccactgcaaatattaagcatttaaaaattcgtcctaattaaat-tttttgctgaggtggatggtaagtagttacgtggcggc 23183758  T
Q  112 tagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgc 191  Q
    | | || ||| ||||| ||||||||| | |||| | || ||||||||||| ||||||||||||||||||||| |||||||    
T  23183759 tggtgattgggtttttttcaggacacgtaagcaaaaggaaattgcaatgatatttttgcccttaatgaatcaggactcgc 23183838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 23594917 - 23595095
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaac 111  Q
    ||||||||||| ||||||||| |||||||||||| ||||| ||  |||||||||||||||  |||||||||||||||||||||| ||| ||| ||||  |    
T  23594917 actaatcctcctattttgccactgcaaatattaagcatttaaaaattcgtcctaattaaat-tttttgctgaggtggatggtaagtagttacgtggcggc 23595015  T
Q  112 tagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgc 191  Q
    | | || ||| ||||| ||||||||| | |||| | || ||||||||||| ||||||||||||||||||||| |||||||    
T  23595016 tggtgattgggtttttttcaggacacgtaagcaaaaggaaattgcaatgatatttttgcccttaatgaatcaggactcgc 23595095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 20103192 - 20102985
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagata 102  Q
    ||||| || |||||||||||||||||||| |||||| || ||||||||||||  |||||||||||||||||   ||||||||||||||   |||||||||    
T  20103192 cctgagcttactaatcctcccattttgcccatgcaattactaatcatttgaaaattcgtcctaattaaaaa-aattgctgaggtggataaaaattagata 20103094  T
Q  103 catggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcgtgcaaagact 202  Q
    | ||||||||   |||||| | || |||||||||| | |||||| | |  |||||||||||||||||| |||| |||| || |||||||  | ||||||     
T  20103093 cgtggcaactgttgactgggtcttcgtcaggacacgtaagcagaagcctcttgcaatgacatttttgcacttactgaagcaggactcgcacgtaaagacc 20102994  T
Q  203 attttaccc 211  Q
    |||||||||    
T  20102993 attttaccc 20102985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 19620841 - 19620777
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaat 67  Q
    |||||||| ||||||||| ||||||||||  |||||||||||||||||||||||||| |||||||    
T  19620841 cctgaacttactaatccttccattttgcccctgcaaatattaatcatttgaattttcatcctaat 19620777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 33882911 - 33882856
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||    
T  33882911 actaatcctcccattttgcca--gcaaatattaatcacttgaattttggtcctaatta 33882856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 16367015 - 16367100
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  16367015 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 16367100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 24387403 - 24387499
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattag 99  Q
    ||||| || |||||||||||||||||| | ||| ||| ||||||||||||||  ||||||||||||| |  |||||||| | |||||| || |||||    
T  24387403 cctgagcttactaatcctcccattttgtccatgtaaaaattaatcatttgaaaattcgtcctaattacatttttttgctaacgtggatagtgattag 24387499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 28599488 - 28599530
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
T  28599488 actaatccttccattttgccattgcaaatattaatcatttgaa 28599530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 17366945 - 17366869
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    ||||||||| ||| | ||||| ||||||||||||||| |||| |||| ||||||||||    |||||||||||||||    
T  17366945 actaatccttccaatctgccactgcaaatattaatcaattgacttttggtcctaattaggtttttttgctgaggtgg 17366869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 1150238 - 1150183
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 89  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||| |||||||||    
T  1150238 tgcaaatattaatcatttgacttttggtcctaattagatttttttgttgaggtgga 1150183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 9694074 - 9694023
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    |||||| | ||||||||| |||||||| || |||||||||||||||||||||    
T  9694074 cctgaagttactaatccttccattttgtcattgcaaatattaatcatttgaa 9694023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 13646132 - 13646199
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaa 70  Q
    |||| ||| ||||||||||||| ||||||  ||||||||||||||| || || ||| |||||||||||    
T  13646132 cctgtacttactaatcctcccaatttgcccctgcaaatattaatcacttaaaatttggtcctaattaa 13646199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 13652141 - 13652074
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaa 70  Q
    |||| ||| ||||||||||||| ||||||  ||||||||||||||| || || ||| |||||||||||    
T  13652141 cctgtacttactaatcctcccaatttgcccctgcaaatattaatcacttaaaatttggtcctaattaa 13652074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 32519489 - 32519402
Alignment:
Q  1 ttcctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||| | |||||||||  || | ||||  |||||||||||||||||||| |||| ||||||||||    |||||||||||||||    
T  32519489 ttcctgaagttactaatcctttcaatctgcccctgcaaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtgg 32519402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 33881638 - 33881693
Alignment:
Q  14 taatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||| |||||||||||||| ||||||||||||||| || | |||| ||||||||||    
T  33881638 taattctcccattttgccactgcaaatattaatcacttcagttttggtcctaatta 33881693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 5608917 - 5608875
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    |||||||||  |||||||||| |||||||||||||||||||||    
T  5608917 actaatcctttcattttgccattgcaaatattaatcatttgaa 5608875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 16367295 - 16367229
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  16367295 cctgaagttactaatccttccaatatgcccctgcaaatattaatcatttgacttttggtcctaatta 16367229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 43681917 - 43681963
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaatttt 58  Q
    ||||||| | ||||||||||| |||||||||||||||||||| ||||    
T  43681917 actaatcattccattttgccattgcaaatattaatcatttgactttt 43681963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 19619587 - 19619628
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttga 53  Q
    ||||||||||||||||||||  ||||||||||||| ||||||    
T  19619587 actaatcctcccattttgcccctgcaaatattaattatttga 19619628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 4375612 - 4375652
Alignment:
Q  14 taatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||| |||||||||||  ||||||||||||||||||||    
T  4375612 taatccttccattttgccatagcaaatattaatcatttgaa 4375652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 9693803 - 9693879
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    ||||||||| ||| | ||||| ||||||  |||||||||||| |||| ||||||||||    |||||||||||||||    
T  9693803 actaatccttccaatctgccactgcaaagtttaatcatttgacttttggtcctaattaggtttttttgctgaggtgg 9693879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 19607000 - 19607036
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaa 70  Q
    |||||||||||||||||||| |||| |||||||||||    
T  19607000 tgcaaatattaatcatttgacttttggtcctaattaa 19607036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 25623340 - 25623400
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcc 63  Q
    ||||| || ||||||||||||||||||||  || ||| ||||||||||| || ||||||||    
T  25623340 cctgagcttactaatcctcccattttgcccctgtaaaaattaatcatttaaaatttcgtcc 25623400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 13197 - 13394
Alignment:
Q  14 taatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaacta 113  Q
    ||||||||||||||||||  ||||| || ||||||||||||  |||||||||||||||||   ||||||||||||| ||||||||||||| ||||| ||     
T  13197 taatcctcccattttgcccctgcaattactaatcatttgaaaattcgtcctaattaaaaaaaattgctgaggtggagggtaattagatacgtggcatctg 13296  T
Q  114 gcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcgtgcaaagactattttaccc 211  Q
    |||| ||| ||||| ||||||||| |||||||| ||  |  ||||||||||||||||||||||||||||  |||||  | |||| ||| |||||||||    
T  13297 gcgaatggttttttttcaggacacgtcagcagaaggggagggcaatgacatttttgcccttaatgaatctggactcatgcgcaatgaccattttaccc 13394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 14425 - 14283
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagata 102  Q
    ||||| || ||||||||||||||||| ||  ||||| || ||||||||||||  ||| |||||||||||||   | ||||||||||| ||||||||||||    
T  14425 cctgagcttactaatcctcccattttacccctgcaattactaatcatttgaaaattcatcctaattaaaaaaaat-gctgaggtggagggtaattagata 14327  T
Q  103 catggcaactagcgactggctttttgtcaggacacatcagcaga 146  Q
      ||||| ||  ||| ||| ||||||||||||||| ||||||||    
T  14326 tgtggcatctgacgaatggttttttgtcaggacacgtcagcaga 14283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 22736738 - 22736562
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagata 102  Q
    ||||| || ||||||||||||||||||||  || || || ||||||||||||  ||||||||||||| |||  |||||||||||||| ||||||||| ||    
T  22736738 cctgagcttactaatcctcccattttgcccctgtaattactaatcatttgaaaattcgtcctaattacaaaaatttgctgaggtggagggtaattagcta 22736639  T
Q  103 catggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatga 179  Q
    | |||||  | | || |||  ||||||||||||||||||||||||||| || | ||| |||||||||||||||||||    
T  22736638 cgtggcatttggtgaatgggattttgtcaggacacatcagcagatggcgatggaaattacatttttgcccttaatga 22736562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 44476101 - 44476277
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagata 102  Q
    |||||||| ||||||||||||||||||||   | || || ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||| ||||| ||    
T  44476101 cctgaacttactaatcctcccattttgcccccgtaattactaatcatttgaaaattcgtcctaattacaaaattttgctgaggtggagggtgattagcta 44476200  T
Q  103 catggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatga 179  Q
    | |||||  ||| ||||||  ||||| ||||||||||||||||||||  |  | ||||||| |||||||||||||||    
T  44476201 cgtggcacttagtgactggggttttggcaggacacatcagcagatggggagggaaatgacaattttgcccttaatga 44476277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 22735420 - 22735587
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaac 111  Q
    ||||||||||||||||||||  || || || ||||||||||||  ||||||||||||| |||  |||||||||||||| ||||||||| ||| |||||      
T  22735420 actaatcctcccattttgcccctgtaattactaatcatttgaaaattcgtcctaattacaaaaatttgctgaggtggagggtaattagctacgtggcatt 22735519  T
Q  112 tagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatga 179  Q
    | | || |||  ||||||||||||||||||| ||||| | || | |||||||||||||||||||||||    
T  22735520 tggtgaatggggttttgtcaggacacatcagaagatgacgatggaaatgacatttttgcccttaatga 22735587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 44481992 - 44481825
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaac 111  Q
    ||||||||||||||||||||  || || || ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||| ||||| ||| |||||      
T  44481992 actaatcctcccattttgcccctgtaattactaatcatttgaaaattcgtcctaattacaaaattttgctgaggtggagggtgattagctacgtggcact 44481893  T
Q  112 tagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatga 179  Q
    ||| ||||||  ||||| ||||||||||||||||||||  |  | ||||||| |||||||||||||||    
T  44481892 tagtgactggggttttggcaggacacatcagcagatggggagggaaatgacaattttgcccttaatga 44481825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 10998205 - 10998120
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||| ||||||||  |||||||||||||||    
T  10998205 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcataattaaatttttttgctgaggtgg 10998120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 22129067 - 22129124
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||| ||||||  |||||||||||||||||||| |||||||||||||||    
T  22129067 actaatccttccaatttgcccctgcaaatattaatcatttgacttttcgtcctaatta 22129124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 24576618 - 24576561
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||| | ||||| ||||||||||||||||||||||||| ||||||||||    
T  24576618 actaatccttccaatctgccagtgcaaatattaatcatttgaattttggtcctaatta 24576561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 11312818 - 11312872
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  11312818 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 11312872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 55036992 - 55036918
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggt 86  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| |||||||||| |  |||||||||||||    
T  55036992 actaatccttccaatctgcccctgcaaatattaatcatttgatttttggtcctaattagatttttttgctgaggt 55036918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 1741439 - 1741524
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    |||||||||||||||    
T  1741439 cctgaagttactaatccttccaatctgcccttgcaaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtgg 1741524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 21300210 - 21300271
Alignment:
Q  28 tgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 89  Q
    |||| ||||||||||||||||||||| |||| ||||||||||    ||||||||||||||||    
T  21300210 tgcccatgcaaatattaatcatttgattttttgtcctaattaggtttttttgctgaggtgga 21300271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30804182 - 30804114
Alignment:
Q  1 ttcctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||||| | ||||||||| ||| | || || |||||||||||||||||||| |||| ||||||||||    
T  30804182 ttcctgaagttactaatccttccaatctgtcactgcaaatattaatcatttgacttttggtcctaatta 30804114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 28310671 - 28310629
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||| | ||||||||||| |||||||||||||||||||||    
T  28310671 actaatctttccattttgccattgcaaatattaatcatttgaa 28310629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 40256926 - 40256992
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  40256926 cctgaagttactaatccttccaatatgcccttgcaaatattaatcatttgacttttggtcctaatta 40256992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 38642973 - 38642941
Alignment:
Q  22 ccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||||||| |||||||||||||||||||||    
T  38642973 ccattttgccattgcaaatattaatcatttgaa 38642941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 37284161 - 37284337
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagata 102  Q
    ||||| || ||||||||||||||||||||  ||||| || ||||||||| ||  ||||||||||||| |||  |||| ||||||||| ||||||||||||    
T  37284161 cctgagcttactaatcctcccattttgcccctgcaattactaatcattttaaaattcgtcctaattacaaaaatttgttgaggtggagggtaattagata 37284260  T
Q  103 catggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatga 179  Q
    | |||||  | | || |||  |||||||||||||| |||||||||||| |  | |||||||||||||||||||||||    
T  37284261 cgtggcatttggtgaatggagttttgtcaggacacgtcagcagatggcgagggaaatgacatttttgcccttaatga 37284337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 37289358 - 37289150
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagata 102  Q
    ||||| || ||||||||||||||||||||  ||||| || ||||||||| ||  ||||||||||||| |||  |||| ||||||||| ||||||||||||    
T  37289358 cctgagcttactaatcctcccattttgcccctgcaattactaatcattttaaaattcgtcctaattacaaaaatttgttgaggtggagggtaattagata 37289259  T
Q  103 catggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcgtgcaaagact 202  Q
    | |||||  | | || |||  |||||||||||||| ||||| |||||| |  | |||||||||||| |||||||||| ||  || ||||| |||| |||     
T  37289258 cgtggcatttggtgaatggagttttgtcaggacacgtcagctgatggcgagggaaatgacatttttacccttaatgagtctggaatcgcgcgcaatgacc 37289159  T
Q  203 attttaccc 211  Q
    |||||||||    
T  37289158 attttaccc 37289150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 12929339 - 12929405
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||||| |||| ||||||||||    
T  12929339 cctgaacttactaatcctcccattttgcccctgcaaatattaatcatttgacttttggtcctaatta 12929405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7159262 - 7159197
Alignment:
Q  1 ttcctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaat 67  Q
    |||||||| | ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  7159262 ttcctgaagttactaatcctcccattttaccc-tgcaaatattaatcatttgaattttcgtcctaat 7159197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 12930824 - 12930890
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||||| ||||||||| ||||||||||  |||||||||||||||||||| |||| ||||||||||    
T  12930824 cctgaacttactaatccttccattttgcccctgcaaatattaatcatttgacttttggtcctaatta 12930890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 26830064 - 26830007
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||||||||||| |||||||||||||||||| |||||  ||||||||||    
T  26830064 actaatccttccattttgccactgcaaatattaatcattttaatttcagtcctaatta 26830007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 27558175 - 27558118
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||||||||||| |||||||||||||||||||| ||||  |||||||||    
T  27558175 actaatccttccattttgccattgcaaatattaatcatttgacttttgatcctaatta 27558118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 12929586 - 12929520
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| ||||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  12929586 cctgaagtgactaatccttccaatctgcccgtgcaaatattaatcatttgacttttggtcctaatta 12929520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 12931070 - 12931004
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | |||| ||||||||||||||||||||| |||| ||||||||||    
T  12931070 cctgaagttactaatccttccaatctgcccatgcaaatattaatcatttgacttttggtcctaatta 12931004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 37563437 - 37563491
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  37563437 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 37563491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 43937946 - 43938031
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||| |||||| |  |||||||||||||||    
T  43937946 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcataattagatttttttgctgaggtgg 43938031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 43938226 - 43938160
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  43938226 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 43938160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 47739036 - 47738978
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaa 70  Q
    ||||||||||||| ||||||  ||||||||||||||| || || ||| |||||||||||    
T  47739036 actaatcctcccaatttgcccctgcaaatattaatcacttaaaatttggtcctaattaa 47738978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 23191161 - 23191120
Alignment:
Q  28 tgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||| |||||||||||||||||||| |||| ||||||||||    
T  23191161 tgccactgcaaatattaatcatttgacttttggtcctaatta 23191120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 7158285 - 7158333
Alignment:
Q  5 tgaactgactaatcctcccattttgccaatgcaaatattaatcatttga 53  Q
    |||||| ||||||||| ||||||||||  || |||||||||||||||||    
T  7158285 tgaacttactaatccttccattttgcccctgtaaatattaatcatttga 7158333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 19980001 - 19980053
Alignment:
Q  2 tcctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||| | ||||||| | ||||||||||  |||||||||||||||||||||    
T  19980001 tcctgaagttactaatcattccattttgccgttgcaaatattaatcatttgaa 19980053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 27557919 - 27557951
Alignment:
Q  22 ccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||||||| |||||||||||||||||||||    
T  27557919 ccattttgccattgcaaatattaatcatttgaa 27557951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 31694532 - 31694608
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    ||||||||||||||| |  | |||||| | ||||||| ||||| ||| |||||||||| |  |||||||||||||||    
T  31694532 actaatcctcccattctttccatgcaattgttaatcacttgaaatttggtcctaattacatttttttgctgaggtgg 31694608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 31695658 - 31695566
Alignment:
Q  7 aactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattag 99  Q
    |||| ||||||||| |||||||  |  ||||| | ||||||| ||||| ||| |||||||| | |  |||||||||||||||| |||||||||    
T  31695658 aacttactaatccttccattttttccctgcaattgttaatcacttgaaatttggtcctaatcacatttttttgctgaggtggagggtaattag 31695566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 37563686 - 37563622
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaat 67  Q
    |||||| | ||||||||| ||| ||||||  |||||||||||||| ||||| |||| ||||||||    
T  37563686 cctgaagttactaatccttccaatttgcccctgcaaatattaatcttttgacttttggtcctaat 37563622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 32619436 - 32619612
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagata 102  Q
    ||||| || ||||||||||||||||||||  || || || ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||| ||||| ||    
T  32619436 cctgagcttactaatcctcccattttgcccctgtaattactaatcatttgaaaattcgtcctaattacaaaattttgctgaggtggagggtgattagcta 32619535  T
Q  103 catggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatga 179  Q
    | |||||  | | ||||||  ||||| ||||||||||||||||||||  |  | ||||||| |||||||||||||||    
T  32619536 cgtggcacttggtgactggggttttggcaggacacatcagcagatggggagggaaatgacaattttgcccttaatga 32619612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 32622404 - 32622228
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagata 102  Q
    ||||| || ||||||||||||||||||||  || || || |||| |||||||  |||||| |||||| ||| ||||||||||||||| ||| ||||| ||    
T  32622404 cctgagcttactaatcctcccattttgcccctgtaattactaataatttgaaaattcgtcataattacaaaattttgctgaggtggagggtgattagcta 32622305  T
Q  103 catggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatga 179  Q
    | |||||  | | ||||||  ||||| ||||||||||||||||||||  |  | ||||||| |||||||||||||||    
T  32622304 cgtggcacttggtgactggggttttggcaggacacatcagcagatggggagggaaatgacaattttgcccttaatga 32622228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 51935237 - 51935068
Alignment:
Q  13 ctaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaact 112  Q
    |||||||||||||||||||  ||||| || ||||||||||||  |||||||||||||||||    |||||||||||| |||||||||||||||||||  |    
T  51935237 ctaatcctcccattttgcccctgcaattactaatcatttgaaaattcgtcctaattaaaaaaaaatgctgaggtggagggtaattagatacatggcatat 51935138  T
Q  113 agcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatgaatc 182  Q
       || ||| ||||| ||||||||| ||||| || ||  |   ||| |||||||||||| ||||||||||    
T  51935137 gatgaatggttttttatcaggacacgtcagccgaaggggaggacaacgacatttttgccattaatgaatc 51935068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 2828249 - 2828334
Alignment:
Q  7 aactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatgg 92  Q
    |||| ||||||||| | ||||||||  ||||||||||||||||||||||||||||| ||||||||||  |||||| ||||||||||    
T  2828249 aacttactaatccttctattttgcctctgcaaatattaatcatttgaattttcgtcttaattaaaaaaatttgcttaggtggatgg 2828334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 32238751 - 32238888
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatt--aaaaatttttgctgaggtggatggtaattaga 100  Q
    |||||||| ||||||||||||||||||||  || |||| |||| ||||| ||  ||||||||||||  |||||    |||||||||||||||||||||||    
T  32238751 cctgaacttactaatcctcccattttgcctctgtaaatgttaagcatttcaaaattcgtcctaattaaaaaaaaaactgctgaggtggatggtaattaga 32238850  T
Q  101 tacatggcaactagcgactggctttttgtcaggacaca 138  Q
    ||| |||||||  | |||||  |||| |||||||||||    
T  32238851 tacgtggcaaccggtgactgagttttggtcaggacaca 32238888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 6344309 - 6344384
Alignment:
Q  5 tgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgc 80  Q
    |||||| ||||||||||||||||||||  |||||||||||| |||||||| ||| ||| ||||||| |||||||||    
T  6344309 tgaacttactaatcctcccattttgcccttgcaaatattaaacatttgaaatttggtcataattaagaatttttgc 6344384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 52563712 - 52563769
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||    
T  52563712 actaatcctcccattttgccactgcaaatattaatcacttgagttttggtcctaatta 52563769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 2829578 - 2829523
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaat 67  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||    
T  2829578 actaatcctcccattttacccctgcaaatattaatcatttgaattttcgtcataat 2829523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 5183567 - 5183643
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  5183567 actaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 5183643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 10019705 - 10019654
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    |||||| | ||||||||| ||||||||||| |||||||||||||||||||||    
T  10019705 cctgaagttactaatccttccattttgccattgcaaatattaatcatttgaa 10019654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 46545063 - 46545012
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    |||||| | ||||||||| ||||||||||| |||||||||||||||||||||    
T  46545063 cctgaagttactaatccttccattttgccactgcaaatattaatcatttgaa 46545012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 6345685 - 6345619
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||||| ||||||||| ||||||||||  |||||||||||| ||||| || ||| ||||||||||    
T  6345685 cctgaacttactaatccttccattttgcccctgcaaatattaagcatttaaaatttagtcctaatta 6345619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 29043056 - 29043002
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||||||||||||||| ||||  |||||||||||  |||||||||||||||    
T  29043056 tgcaaatattaatcatttgacttttgatcctaattaaatttttttgctgaggtgg 29043002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 28534845 - 28534780
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatatt-aatcatttgaattttcgtcctaat 67  Q
    |||||||| ||||||||| ||||||| ||  |||||||||| |||||||||||||||| |||||||    
T  28534845 cctgaacttactaatccttccattttacctctgcaaatattaaatcatttgaattttcatcctaat 28534780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 29980961 - 29980904
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||| ||||||  |||||||||||||||||||| |||| ||||||||||    
T  29980961 actaatccttccaatttgcccctgcaaatattaatcatttgatttttggtcctaatta 29980904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 30830454 - 30830397
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||| | ||||||||||| ||||||||||||||||||||| | | ||||||||||    
T  30830454 actaatcattccattttgccattgcaaatattaatcatttgaaatatggtcctaatta 30830397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 1047527 - 1047451
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| |||||||||| |  |||| ||||||||||    
T  1047527 actaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattagattttttagctgaggtgg 1047451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 25414905 - 25414980
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtg 87  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    ||||||||||||||    
T  25414905 actaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtg 25414980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 1040350 - 1040416
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  1040350 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 1040416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 1047256 - 1047322
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  1047256 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 1047322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 2953547 - 2953601
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||||||||||||||| |||| ||| |||||| |  |||||||||||||||    
T  2953547 tgcaaatattaatcatttgacttttggtcataattagatttttttgctgaggtgg 2953601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 2953796 - 2953730
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  2953796 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgatttttggtcctaatta 2953730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 5183826 - 5183772
Alignment:
Q  15 aatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| ||| ||||||  |||||||||||||||||||| |||| ||||||||||    
T  5183826 aatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaatta 5183772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 19755737 - 19755671
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  19755737 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 19755671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 26953184 - 26953234
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgag 84  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||    
T  26953184 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgag 26953234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 35312299 - 35312257
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||||| |||||||| || |||||||||||||||||||||    
T  35312299 actaatccttccattttgtcattgcaaatattaatcatttgaa 35312257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 46849990 - 46849924
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||| ||||| ||| ||||||  |||||||||||||||||||| |||| ||||||||||    
T  46849990 cctgaagttactgatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaatta 46849924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 739280 - 739337
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  739280 actaatccttccaatatgcccctgcaaatattaatcatttgacttttggtcctaatta 739337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 33347739 - 33347682
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  33347739 actaatccttccaatctgcccttgcaaatattaatcatttgacttttggtcctaatta 33347682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 37152861 - 37152804
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  37152861 actaatccttccaatctgcccctgcaaatattaatcatttgacttttagtcctaatta 37152804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 49002937 - 49002994
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  49002937 actaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 49002994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 49003198 - 49003141
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  49003198 actaatccttccaatctgcctctgcaaatattaatcatttgatttttggtcctaatta 49003141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 52564990 - 52564933
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| || ||||||||||| | ||||||||||||| |||| |||| ||||||||||    
T  52564990 actaattcttccattttgccactacaaatattaatcacttgagttttggtcctaatta 52564933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 37152599 - 37152675
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    ||||||||| ||| | ||||  |||||||| ||||||||||| ||||  ||||||||| |  |||||||||||||||    
T  37152599 actaatccttccaatctgcccgtgcaaatactaatcatttgacttttgatcctaattagatttttttgctgaggtgg 37152675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 49093093 - 49093153
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcc 63  Q
    |||||||| ||||||||| |||||||||| ||| || || ||||||||||||  |||||||    
T  49093093 cctgaacttactaatccttccattttgcccatgtaattactaatcatttgaaagttcgtcc 49093153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 14744778 - 14744692
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 89  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  14744778 cctgaacttactaatcctcccattttgcccctgcaaatattaatcatttgaattttcgtcctaattaaaaaaatttgcttaggtgga 14744692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 21978065 - 21977889
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagata 102  Q
    ||||| || ||||||||||||| ||||||  || || || ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||| ||||| ||    
T  21978065 cctgagcttactaatcctcccactttgcccctgtaattactaatcatttgaaaattcgtcctaattacaaaattttgctgaggtggagggtgattagcta 21977966  T
Q  103 catggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatga 179  Q
    | |||||  | | ||||||  ||||| ||||||||||||||||||||  |  | ||||||| |||||||||||||||    
T  21977965 cgtggcacttggtgactggggttttggcaggacacatcagcagatggggagggaaatgacaattttgcccttaatga 21977889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 21972150 - 21972317
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaac 111  Q
    |||||||||||||||||||   || || || ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||| ||||| ||| |||||      
T  21972150 actaatcctcccattttgctcctgtaattactaatcatttgaaaattcgtcctaattacaaaattttgctgaggtggagggtgattagctacgtggcact 21972249  T
Q  112 tagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatga 179  Q
    | | ||||||  ||||| ||||||||||||||||||||  |  | ||||||| |||||||||||||||    
T  21972250 tggtgactggggttttggcaggacacatcagcagatggggagggaaatgacaattttgcccttaatga 21972317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 8654168 - 8654349
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttt-tgctgaggtggatggtaattagatacatggcaa 110  Q
    |||||||||||||||||| |  ||||| || ||||||||||||  |||||||||||||||||     || ||||||||| ||||||||||||| |||||     
T  8654168 actaatcctcccattttgtccctgcaattactaatcatttgaaaattcgtcctaattaaaaaaaaaatgttgaggtggagggtaattagatacgtggcat 8654267  T
Q  111 ctagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcg 192  Q
    ||  ||| ||| |||||| ||| |||| |||||||| ||  |  |||||| ||||||| |||||| | ||||| ||||||||    
T  8654268 ctgacgaatggttttttgccagaacacgtcagcagaaggggagggcaatggcatttttacccttactaaatcaggactcgcg 8654349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 39402196 - 39402132
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaat 67  Q
    |||| ||| ||||||||||||||||||||  |||||||||||||||||||| |||| ||||||||    
T  39402196 cctggacttactaatcctcccattttgcccctgcaaatattaatcatttgagttttggtcctaat 39402132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 8323368 - 8323303
Alignment:
Q  23 cattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||||| |||||||||||||||||||| |||| ||||||||||    |||||||||||||||    
T  8323368 cattttgccattgcaaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtgg 8323303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 13064732 - 13064656
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  13064732 actaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 13064656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 8673796 - 8673701
Alignment:
Q  13 ctaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggc 108  Q
    ||||| |||||||||||||  ||||| | ||||||||||||| |||| |||||||||    |||||| ||||||||| | | ||||||||||||||    
T  8673796 ctaattctcccattttgcccttgcaattgttaatcatttgaaatttcatcctaattacgtttttttgatgaggtggaggatgattagatacatggc 8673701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 21260917 - 21260968
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    |||||| | ||||||||| ||||||||||| |||||||||||||||||||||    
T  21260917 cctgaagttactaatccttccattttgccattgcaaatattaatcatttgaa 21260968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 20705014 - 20704960
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  20705014 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 20704960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 25253138 - 25253204
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| ||||||  |||||||||||||||||||| |||| ||||||||||    
T  25253138 cctgaagttactaatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaatta 25253204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 25316928 - 25316994
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| ||||||  |||||||||||||||||||| |||| ||||||||||    
T  25316928 cctgaagttactaatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaatta 25316994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 37945046 - 37945112
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| ||||||  |||||||||||||||||||| |||| ||||||||||    
T  37945046 cctgaagttactaatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaatta 37945112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 25253418 - 25253333
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||| | ||||||||| ||| | ||||  |||||||| ||||||||||| |||| |||||||||| |  |||||||||||||||    
T  25253418 cctgaagttactaatccttccaatctgcccttgcaaatactaatcatttgacttttggtcctaattagatttttttgctgaggtgg 25253333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 25317209 - 25317124
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||| | ||||||||| ||| | ||||  |||||||| ||||||||||| |||| |||||||||| |  |||||||||||||||    
T  25317209 cctgaagttactaatccttccaatctgcccttgcaaatactaatcatttgacttttggtcctaattagatttttttgctgaggtgg 25317124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 12991089 - 12991035
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||||||||||||||| ||||  ||||||||| |  |||||||||||||||    
T  12991089 tgcaaatattaatcatttgacttttgatcctaattagatttttttgctgaggtgg 12991035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 14745500 - 14745566
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  14745500 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 14745566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 22024193 - 22024151
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||    
T  22024193 actaatccttccaatttgccactgcaaatattaatcatttgaa 22024151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 32052556 - 32052490
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  32052556 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 32052490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 33735645 - 33735579
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  33735645 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 33735579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 7015585 - 7015626
Alignment:
Q  28 tgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||| |||||||||||||||||||| |||| ||||||||||    
T  7015585 tgccactgcaaatattaatcatttgacttttggtcctaatta 7015626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 20856984 - 20857044
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcc 63  Q
    ||||| || ||||||||||||||||||||  || |||  ||||||||||||| ||||||||    
T  20856984 cctgagcttactaatcctcccattttgcccctgtaaaagttaatcatttgaaatttcgtcc 20857044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 73161 - 73337
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagata 102  Q
    ||||| || ||||||||||||||||||||  || || || ||||||||||||  || |||||||||| |||  |||||||||||||| ||||||||| ||    
T  73161 cctgagcttactaatcctcccattttgcccctgtaattactaatcatttgaaaatttgtcctaattacaaaaatttgctgaggtggagggtaattagcta 73260  T
Q  103 catggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatga 179  Q
    | |||||  | | || |||  ||||||||||||||||||||||||||| |  | ||||||  |||||||||||||||    
T  73261 cgtggcacttggtgaatgggattttgtcaggacacatcagcagatggcgagggaaatgaccattttgcccttaatga 73337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 55013138 - 55012961
Alignment:
Q  2 tcctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagat 101  Q
    |||||| || ||||||||||||| ||||||  || || || ||||||||||||  ||||||||||||| |||  ||||| |||||||| ||||||||| |    
T  55013138 tcctgagcttactaatcctcccagtttgcccctgtaattactaatcatttgaaaattcgtcctaattacaaaaatttgccgaggtggagggtaattaggt 55013039  T
Q  102 acatggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaatga 179  Q
    || |||||  |   || |||  |||||||| ||||||||||||||||||||  | ||||||||||||| |||||||||    
T  55013038 acgtggcatttgatgaatggagttttgtcaagacacatcagcagatggcaagggaaatgacatttttgtccttaatga 55012961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 54590197 - 54590284
Alignment:
Q  5 tgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatgg 92  Q
    |||||| |||||| || ||||||||||  | ||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||    
T  54590197 tgaacttactaattcttccattttgcctctacaaatattaatcatttgaattttcgtcctaattaaaaaaatttgcttaggtggatgg 54590284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 53477127 - 53477041
Alignment:
Q  4 ctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggat 90  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||||||||| |||  ||||||| | |  |||||| ||||||||||    
T  53477127 ctgaacttactaatcctcccattttgcccctgcaaatattaatcatttgaaatttgttcctaatcacatttttttgatgaggtggat 53477041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 54591626 - 54591560
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaa--tattaatcatttgaattttcgtcctaat 67  Q
    |||||||| ||||| ||||||||||||||  ||||||  ||||||||||||||||||||||||||||    
T  54591626 cctgaacttactaaacctcccattttgcccctgcaaaaatattaatcatttgaattttcgtcctaat 54591560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 47862475 - 47862399
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    ||||||||| | | ||||||  |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  47862475 actaatccttctaatttgcccctgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 47862399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 489507 - 489465
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
T  489507 actaatccttccattttgccattgcaaatattaatcatttgaa 489465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 515299 - 515257
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
T  515299 actaatccttccattttgccattgcaaatattaatcatttgaa 515257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 19916708 - 19916774
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||| |||||||||||||||||||| |||| ||||||||||    
T  19916708 cctgaagttactaatccttccaatctgccactgcaaatattaatcatttgacttttggtcctaatta 19916774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23455739 - 23455677
Alignment:
Q  1 ttcctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcc 63  Q
    ||||||| || ||||||||||||||||||||| || ||| ||||||||||| || ||||||||    
T  23455739 ttcctgagcttactaatcctcccattttgccactgtaaaaattaatcatttcaaatttcgtcc 23455677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32846412 - 32846465
Alignment:
Q  1 ttcctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    |||||||| | | ||||||| ||||||||||| |||||||||||||||||||||    
T  32846412 ttcctgaagttattaatccttccattttgccattgcaaatattaatcatttgaa 32846465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 47981959 - 47981882
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 89  Q
    ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    ||||||||||||||||    
T  47981959 actaatccttccaatctgcccctgcaaatattaatcatttgatttttggtcctaattaggtttttttgctgaggtgga 47981882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 8286995 - 8287035
Alignment:
Q  14 taatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  8286995 taatccttccattttgccattgcaaatattaatcatttgaa 8287035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 10128767 - 10128809
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||||||||||||||||| | ||| |||||||||||||||    
T  10128767 actaatcctcccattttgccactacaattattaatcatttgaa 10128809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 13872152 - 13872206
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||| ||||||||||| |||| |||||||||| |  |||||||||||||||    
T  13872152 tgcaaatactaatcatttgacttttggtcctaattagatttttttgctgaggtgg 13872206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 20086489 - 20086555
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  20086489 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttagtcctaatta 20086555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 33294444 - 33294390
Alignment:
Q  34 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 88  Q
    |||||||||||||||||||| |||| |||||||||| |  ||||| |||||||||    
T  33294444 tgcaaatattaatcatttgatttttggtcctaattagatttttttactgaggtgg 33294390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 26601383 - 26601342
Alignment:
Q  28 tgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||| ||||||||||||||||||||| |||| ||||||||||    
T  26601383 tgcccatgcaaatattaatcatttgacttttggtcctaatta 26601342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 34238772 - 34238736
Alignment:
Q  33 atgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  34238772 atgcaaatattaatcatttgacttttagtcctaatta 34238736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 261062 - 261142
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatgg 92  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||  |||||| ||||||||||    
T  261062 actaatcctcccattttgcccctgcaaatattaatcatttgaattttcgacctaattaaaaaaatttgcttaggtggatgg 261142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 262489 - 262425
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaat 67  Q
    |||||||| ||||||||||||||||| ||  |||||||||||||||||| ||||||| |||||||    
T  262489 cctgaacttactaatcctcccatttttcccctgcaaatattaatcatttaaattttcatcctaat 262425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 645 - 711
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||||| |||||||||| |||||||||  |||||||||||||||||||| |||| || |||||||    
T  645 cctgaacttactaatcctctcattttgcccctgcaaatattaatcatttgacttttggttctaatta 711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 925 - 859
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| | ||||  |||||||||||||||||||| |||| ||||||||||    
T  925 cctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 10914 - 10971
Alignment:
Q  12 actaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    ||||||||| ||||||||||| |||||||||||||||||||| ||||  |||||||||    
T  10914 actaatccttccattttgccattgcaaatattaatcatttgacttttgatcctaatta 10971  T

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Target: scaffold0279; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 11170 - 11138
Alignment:
Q  22 ccattttgccaatgcaaatattaatcatttgaa 54  Q
    ||||||||||| |||||||||||||||||||||    
T  11170 ccattttgccattgcaaatattaatcatttgaa 11138  T

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Target: scaffold0206 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 10377 - 10443
Alignment:
Q  3 cctgaactgactaatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatta 69  Q
    |||||| | ||||||||| ||| ||||||  |||||||||||||||||||| |||| ||||||||||    
T  10377 cctgaagttactaatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaatta 10443  T

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Target: scaffold0233 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 8753 - 8699
Alignment:
Q  14 taatcctcccattttgccaatgcaaatattaatcatttgaattttcgtcctaatt 68  Q
    ||||||| ||| |||| || |||||||||||||||||||| |||| |||||||||    
T  8753 taatccttccaatttgtcactgcaaatattaatcatttgactttttgtcctaatt 8699  T

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Target: scaffold0321 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 10961 - 10908
Alignment:
Q  36 caaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 89  Q
    |||||||||||||||||| |||| ||||||||||    ||||||||||||||||    
T  10961 caaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtgga 10908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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