View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9492_low_11 (Length: 243)
Name: NF9492_low_11
Description: NF9492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9492_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 4929914 - 4930138
Alignment:
| Q |
19 |
cttgtaccttaagatccgagccatggatatcatagtagaagagcatctaatgatctctttccaaggagtaatacacaggaaaaggttctctccctttgtg |
118 |
Q |
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| T |
4929914 |
cttgtaccttaagatccgagccatggatattatagtagtaaagcatctaatgatctctttccaaggagttatacacaggaaaaggttctctccctttgtg |
4930013 |
T |
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| Q |
119 |
ccactaggtgagttaagtactagattatgttaaatttgatgatcgtacactctggattagatggtgtttaggattttgatgccttaattaattgttgaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||| |
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| T |
4930014 |
ccactaggtgagttaagtactagattatgttaaatttgatgatcgtacactctggattagatagtgtttgggattttgatgcattaattaattgttgaca |
4930113 |
T |
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| Q |
219 |
acccataaacatgtttataaacctc |
243 |
Q |
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|||||||||||||||||||| |||| |
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| T |
4930114 |
acccataaacatgtttataatcctc |
4930138 |
T |
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