View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9492_low_5 (Length: 379)
Name: NF9492_low_5
Description: NF9492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9492_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 39 - 350
Target Start/End: Complemental strand, 38088571 - 38088260
Alignment:
| Q |
39 |
ccgtttaggcaccgaaatagagaaataaaggttttagtagtgggaaattgctcttctaactttaaaaattgctcttttaacaccc-aaaaatatcaagat |
137 |
Q |
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| T |
38088571 |
ccgtttaggcaccgaaatagagaaataagggttttagtagttggaaattgctcttctaactttaaaaattggtcttt-aacaccccaaaaatatcaagat |
38088473 |
T |
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| Q |
138 |
acgtaaaacgacaacgacaactatgtgcacaaacacccatttaattattctttatggttat-ggttaaggtttctattttcatttgttttatcattttct |
236 |
Q |
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| T |
38088472 |
acttaaaacgacaacgacaactatgtgcacaaacacccgtttaattattcttttcggccatgggttgaggtttcttttttcatttgttttatcattttct |
38088373 |
T |
|
| Q |
237 |
ttgcgaaaaataatgagtatctttgtgagtaagtttccatnnnnnnntctttgtgagtaagctcttaatctaaaaaatcatttatactacactttgtttt |
336 |
Q |
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| T |
38088372 |
ttgcgaataataatgagtatctttgtgagtaagtttccat-aaaaaatctttgtgagtaaactcttaatctaaaaaatcatttatactacgctttgtttt |
38088274 |
T |
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| Q |
337 |
tagggtccctctat |
350 |
Q |
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||||||| |||||| |
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| T |
38088273 |
tagggtctctctat |
38088260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 33730608 - 33730653
Alignment:
| Q |
83 |
aaattgctcttctaactttaaaaattgctcttttaacacccaaaaa |
128 |
Q |
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| T |
33730608 |
aaattgctcttctaacttcgaaaattgctcttttaacaccctaaaa |
33730653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 16243170 - 16243221
Alignment:
| Q |
82 |
gaaattgctcttctaactttaaaaattgctcttttaacacccaaaaatatcaa |
134 |
Q |
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| T |
16243170 |
gaaattgctcttttaacttcgaaaattgtt-ttttaacacccaaaaatatcaa |
16243221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 31823534 - 31823498
Alignment:
| Q |
79 |
tgggaaattgctcttctaactttaaaaattgctcttt |
115 |
Q |
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| T |
31823534 |
tgggaaattgctattctaacttcaaaaattgctcttt |
31823498 |
T |
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