View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9492_low_6 (Length: 301)

Name: NF9492_low_6
Description: NF9492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9492_low_6
NF9492_low_6
[»] scaffold0010 (1 HSPs)
scaffold0010 (19-225)||(236586-236792)
[»] chr7 (4 HSPs)
chr7 (19-225)||(34762618-34762825)
chr7 (19-225)||(34764022-34764228)
chr7 (78-160)||(31403815-31403898)
chr7 (94-182)||(43970061-43970150)
[»] chr1 (5 HSPs)
chr1 (19-225)||(49508485-49508692)
chr1 (19-225)||(45432740-45432947)
chr1 (19-225)||(8771185-8771392)
chr1 (93-171)||(7386682-7386761)
chr1 (122-217)||(28037693-28037788)
[»] chr2 (5 HSPs)
chr2 (19-296)||(43114968-43115236)
chr2 (123-191)||(37670673-37670741)
chr2 (89-151)||(648530-648593)
chr2 (84-170)||(4017102-4017189)
chr2 (84-170)||(24467306-24467393)
[»] chr8 (5 HSPs)
chr8 (19-225)||(13533405-13533611)
chr8 (19-225)||(13622945-13623151)
chr8 (84-170)||(35613617-35613704)
chr8 (122-160)||(32229992-32230030)
chr8 (85-172)||(8703394-8703482)
[»] scaffold0839 (1 HSPs)
scaffold0839 (19-225)||(4565-4772)
[»] chr3 (7 HSPs)
chr3 (19-121)||(11596061-11596163)
chr3 (122-217)||(11593866-11593961)
chr3 (101-182)||(19671234-19671315)
chr3 (92-192)||(29210821-29210922)
chr3 (92-151)||(20537715-20537775)
chr3 (23-65)||(36035946-36035989)
chr3 (123-173)||(4741572-4741622)
[»] chr6 (2 HSPs)
chr6 (91-151)||(25357656-25357717)
chr6 (90-142)||(11338407-11338460)
[»] chr5 (2 HSPs)
chr5 (84-170)||(6292441-6292528)
chr5 (91-172)||(24010372-24010454)
[»] chr4 (1 HSPs)
chr4 (92-139)||(53213152-53213200)


Alignment Details
Target: scaffold0010 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 236792 - 236586
Alignment:
Q  19 gaacttggtgacattattttttattgtaaacaacttttgtctttgcatgctaacttttatgtgcgctttgtaaggaggcaagcaaataaggtagctcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  236792 gaacttggtgacattattttttattgtaaacaacttttgtctttgcacgctaacttttctgtgcgttttgtaaggaggcaagcaaataaggtagctcata 236693  T
Q  119 aca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacactttattattgaattatatgaattaattttg 217  Q
    ||| |||||||||||| ||||| || |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  236692 acatagctagagcttccttatccca-cctagcccccatattttctatgatgtaccgtctagtttgaacactttattattgaatgatatgaattaattttg 236594  T
Q  218 acgttgct 225  Q
    ||||||||    
T  236593 acgttgct 236586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 34762825 - 34762618
Alignment:
Q  19 gaacttggtgacattattttttattgtaaacaacttttgtctttgcatgctaacttttatgtgcgctttgtaaggaggcaagcaaataaggtagctcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  34762825 gaacttggtgacattattttttattgtaaacaacttttgtctttgcacgctaacttttctgtgcgttttgtaaggagacaagcaaataaggtagctcata 34762726  T
Q  119 aca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacactttattattgaattatatgaattaattttg 217  Q
    ||| |||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  34762725 acatagctagagcttccttatcccaccctagcccccatattttctttgatgtaccgtctagtttgaacactttattattgaattatatgaattaatttta 34762626  T
Q  218 acgttgct 225  Q
     |||||||    
T  34762625 ccgttgct 34762618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 34764022 - 34764228
Alignment:
Q  19 gaacttggtgacattattttttattgtaaacaacttttgtctttgcatgctaacttttatgtgcgctttgtaaggaggcaagcaaataaggtagctcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  34764022 gaacttggtgacattattttttattgtaaacaacttttgtctttgcacgctaacttttctgtgcgttttgtaaggagtcaagcaaataaggtagctcata 34764121  T
Q  119 aca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacactttattattgaattatatgaattaattttg 217  Q
    ||| |||||||||||| ||||| || |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  34764122 acatagctagagcttccttatccca-cctagcccccatattttctttgatgtaccgtctagtttgaacactttattattgaattatatgaattaatttta 34764220  T
Q  218 acgttgct 225  Q
     |||||||    
T  34764221 ccgttgct 34764228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 31403815 - 31403898
Alignment:
Q  78 tgtgcgctttgtaaggaggcaagcaaataaggtagctcataaca-agctagagcttctttatctcaccctagccctcatatttt 160  Q
    |||| ||| ||| ||||| ||| |||||| |||||||||||||| |||||||||||  ||||||||||||||||  ||||||||    
T  31403815 tgtgagctatgtcaggagacaaacaaatagggtagctcataacatagctagagctttcttatctcaccctagcctccatatttt 31403898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 43970061 - 43970150
Alignment:
Q  94 aggcaagcaaataaggtagctcataaca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttg 182  Q
    ||||||||||||||||| |||||||  |  |||||||| || |||||  | |||||||| |||||||||| ||||||||| |||| ||||    
T  43970061 aggcaagcaaataaggttgctcatagtattgctagagcgtccttatccaatcctagcccccatattttctatgatgtaccatctactttg 43970150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 49508485 - 49508692
Alignment:
Q  19 gaacttggtgacattattttttattgtaaacaacttttgtctttgcatgctaacttttatgtgcgctttgtaaggaggcaagcaaataaggtagctcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  49508485 gaacttggtgacattattttttattgtaaacaacttttgtctttgcacgctaacttttatgtgcgttttgtaaggaggcaaacaaataaggtagctcata 49508584  T
Q  119 aca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacactttattattgaattatatgaattaattttg 217  Q
    ||| |||||||||||| ||||| ||||||||||| |||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||||||||||||    
T  49508585 acatagctagagcttccttatcccaccctagcccccatattttctatgatgtaccatctagtttgaacactttattattgaatgatatgaattaattttg 49508684  T
Q  218 acgttgct 225  Q
    | ||||||    
T  49508685 atgttgct 49508692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 45432740 - 45432947
Alignment:
Q  19 gaacttggtgacattattttttattgtaaacaacttttgtctttgcatgctaacttttatgtgcgctttgtaaggaggcaagcaaataaggtagctcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||| |||||| ||||||||||||||| ||||||||||||||||||    
T  45432740 gaacttggtgacattattttttattgtaaacaacttttgtctttgtacactaacttttctgtgcgttttgtaaggaggcaaacaaataaggtagctcata 45432839  T
Q  119 aca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacactttattattgaattatatgaattaattttg 217  Q
    ||| |||||||||||| ||||| ||||||||||| | |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  45432840 acatagctagagcttccttatcccaccctagcccccgtattttctctgatgtaccgtctagtttgaacactttattattgaatgatatgaattaattttg 45432939  T
Q  218 acgttgct 225  Q
     |||||||    
T  45432940 ccgttgct 45432947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 8771392 - 8771185
Alignment:
Q  19 gaacttggtgacattattttttattgtaaacaacttttgtctttgcatgctaacttttatgtgcgctttgtaaggaggcaagcaaataaggtagctcata 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| | |||| |||||||||||| |||||||||||||||||||||    
T  8771392 gaacttggtgagattattttttattgtaaacaacttttgtctttccacgctaacttttctatgcgttttgtaaggaggtaagcaaataaggtagctcata 8771293  T
Q  119 aca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacactttattattgaattatatgaattaattttg 217  Q
    ||| |||||||| ||| ||||| ||||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||||| |||| |||||||||||    
T  8771292 acatagctagagtttccttatcccaccctagcccccatattttctctgatgtaccgtctagtttgaaaactttattattgaatgatataaattaattttg 8771193  T
Q  218 acgttgct 225  Q
    ||||||||    
T  8771192 acgttgct 8771185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 7386682 - 7386761
Alignment:
Q  93 gaggcaagcaaataaggtagctcataaca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtac 171  Q
    ||||||||||||||| |||||||||| ||  |||||||| ||||||||| | |||||||| ||| |||| | ||||||||    
T  7386682 gaggcaagcaaataaagtagctcatagcattgctagagcctctttatctaatcctagcccccatgttttttatgatgtac 7386761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 28037693 - 28037788
Alignment:
Q  122 agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacactttattattgaattatatgaattaattttg 217  Q
    ||||||||||||||||||||| |||||||| ||| |||| | |  |||||| || |||||| || |||| || |||||| | ||| ||||||||||    
T  28037693 agctagagcttctttatctcatcctagcccccatcttttttatagtgtaccttcaaatttgtactctttgttcttgaatgaaatgcattaattttg 28037788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 43114968 - 43115236
Alignment:
Q  19 gaacttggtgacattattttttattgtaaacaacttttgtctttgcatgctaacttttatgtgcgctttgtaaggaggcaagcaaataaggtagctcata 118  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||||||||||    
T  43114968 gaacttggtgacatt-ttttttattgtaaacaatttttgtctttgcacgctaacttttctgtgcgttttgtaaggaggcaaacaaataaggtagctcata 43115066  T
Q  119 aca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacactttattattgaattatatgaattaattttg 217  Q
    ||| |||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  43115067 acatagctagagcttccttatcccaccctagcccccatattttctctgatgtaccgtctaatttgaacactttattattgaatgatatgaattaatcttg 43115166  T
Q  218 acgttgctnnnnnnnncatgtgatgaaaacttgtgacgtttga-cccacctcaattctgcatttgaaatttaacacgaaa 296  Q
    ||||||||              |  ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43115167 acgttgctaaaa----------aaaaaaacatgtgacgtttgaccccacctcaattctgcatttgaaatttaacacgaaa 43115236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 37670741 - 37670673
Alignment:
Q  123 gctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacacttta 191  Q
    |||||||| |||||||| ||||||||||| |||||||| | |||||||||| ||| |||| || |||||    
T  37670741 gctagagcatctttatcccaccctagcccccatattttttatgatgtaccgactactttgtacccttta 37670673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 648530 - 648593
Alignment:
Q  89 taaggaggcaagcaaataaggtagctcataaca-agctagagcttctttatctcaccctagccc 151  Q
    ||||||||||||||||||  || ||||||| || |||||||||||||||||| || ||||||||    
T  648530 taaggaggcaagcaaatagagtggctcatagcatagctagagcttctttatcacaacctagccc 648593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 4017189 - 4017102
Alignment:
Q  84 ctttgtaaggaggcaagcaaataaggtagctcataaca-agctagagcttctttatctcaccctagccctcatattttctgtgatgta 170  Q
    |||||| ||||||||||||||| |||| ||||||  || ||| ||||| || |||||| |||||||||| ||| |||||| |||||||    
T  4017189 ctttgttaggaggcaagcaaatgaggttgctcattccatagcaagagcatccttatctaaccctagcccccatgttttctatgatgta 4017102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 24467306 - 24467393
Alignment:
Q  84 ctttgtaaggaggcaagcaaataaggtagctcataaca-agctagagcttctttatctcaccctagccctcatattttctgtgatgta 170  Q
    |||||| ||||||||||||||| |||| ||||||  || ||| ||||| || |||||| |||||||||| ||| |||||| |||||||    
T  24467306 ctttgttaggaggcaagcaaatgaggttgctcattccatagcaagagcatccttatctaaccctagcccccatgttttctatgatgta 24467393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 6e-71; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 13533405 - 13533611
Alignment:
Q  19 gaacttggtgacattattttttattgtaaacaacttttgtctttgcatgctaacttttatgtgcgctttgtaaggaggcaagcaaataaggtagctcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||| ||||||||||||||||||||| ||||||    
T  13533405 gaacttggtgacattattttttattgtaaacaacttttgtctttgcacgccaacttttctgtgcgttttgttaggaggcaagcaaataaggtaactcata 13533504  T
Q  119 aca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacactttattattgaattatatgaattaattttg 217  Q
    ||| ||||| |||||| ||||| ||||||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  13533505 acatagctaaagcttccttatcccaccctagccc-catattttctctgatgtaccgtctagtttgaccactttattattgaatgatatgaattaattttg 13533603  T
Q  218 acgttgct 225  Q
    | ||||||    
T  13533604 atgttgct 13533611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 13622945 - 13623151
Alignment:
Q  19 gaacttggtgacattattttttattgtaaacaacttttgtctttgcatgctaacttttatgtgcgctttgtaaggaggcaagcaaataaggtagctcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||| ||||||||||||||||||||| ||||||    
T  13622945 gaacttggtgacattattttttattgtaaacaacttttgtctttgcacgccaacttttctgtgcgttttgttaggaggcaagcaaataaggtaactcata 13623044  T
Q  119 aca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacactttattattgaattatatgaattaattttg 217  Q
    ||| ||||| |||||| ||||| ||||||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  13623045 acatagctaaagcttccttatcccaccctagccc-catattttctctgatgtaccgtctagtttgaccactttattattgaatgatatgaattaattttg 13623143  T
Q  218 acgttgct 225  Q
    | ||||||    
T  13623144 atgttgct 13623151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 35613617 - 35613704
Alignment:
Q  84 ctttgtaaggaggcaagcaaataaggtagctcataaca-agctagagcttctttatctcaccctagccctcatattttctgtgatgta 170  Q
    |||||| ||||||||||||||| |||| ||||||  || ||| ||||| || |||||| |||||||||| ||| |||||| |||||||    
T  35613617 ctttgttaggaggcaagcaaatgaggttgctcattccatagcaagagcatccttatctaaccctagcccccatgttttctatgatgta 35613704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 32230030 - 32229992
Alignment:
Q  122 agctagagcttctttatctcaccctagccctcatatttt 160  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  32230030 agctagagcttccttatctcaccctagccttcatatttt 32229992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 8703394 - 8703482
Alignment:
Q  85 tttgtaaggaggcaagcaaataaggtagctcataaca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtacc 172  Q
    ||||| ||||||||||| ||||| |||||||| ||||  ||||||||| |||||||||| |||| ||  ||| ||||  ||||||||||    
T  8703394 tttgttaggaggcaagctaataaagtagctcacaacattgctagagctactttatctcatcctatcctccatgttttaagtgatgtacc 8703482  T

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Target: scaffold0839 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 4772 - 4565
Alignment:
Q  19 gaacttggtgacattattttttattgtaaacaacttttgtctttgcatgctaacttttatgtgcgctttgtaaggaggcaagcaaataaggtagctcata 118  Q
    ||||||||||||||||||||||| ||||||||||||| ||| ||| | |||||||||| |||||| ||||||||||| |||||||||||| |||||||||    
T  4772 gaacttggtgacattattttttactgtaaacaactttagtccttgtacgctaacttttctgtgcgttttgtaaggagacaagcaaataagttagctcata 4673  T
Q  119 aca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacactttattattgaattatatgaattaattttg 217  Q
    ||| |||||||||||| ||||| ||||||| ||| |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  4672 acatagctagagcttccttatcccaccctaacccccatattttctctgatgtaccgtctagtttgaacactttattattgaatgatatgaattaattttg 4573  T
Q  218 acgttgct 225  Q
     |||||||    
T  4572 ccgttgct 4565  T

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Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 11596163 - 11596061
Alignment:
Q  19 gaacttggtgacattattttttattgtaaacaacttttgtctttgcatgctaacttttatgtgcgctttgtaaggaggcaagcaaataaggtagctcata 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  |||||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  11596163 gaacttggtgacattatttcttattgtaaacaacttttgtctttgcacactaactattatgtgcgttttgtaaggaggcaaacaaataaggtagctcata 11596064  T
Q  119 aca 121  Q
    |||    
T  11596063 aca 11596061  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 11593961 - 11593866
Alignment:
Q  122 agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacactttattattgaattatatgaattaattttg 217  Q
    |||||||||||  |||||||||||||| || |||||||||| |||||||||||||  |||||||||||||||||| ||| ||||||| || |||||    
T  11593961 agctagagcttacttatctcaccctagtccccatattttctctgatgtaccgtctggtttgaacactttattattaaatgatatgaactagttttg 11593866  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 19671234 - 19671315
Alignment:
Q  101 caaataaggtagctcataaca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttg 182  Q
    |||||||||||||| |||||| |||||||||||| ||||| ||||||||||| ||||||||   ||||||||| ||| |||||    
T  19671234 caaataaggtagcttataacatagctagagcttccttatcccaccctagccc-catatttttcatgatgtaccatcttatttg 19671315  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 29210922 - 29210821
Alignment:
Q  92 ggaggcaagcaaataaggtagctcataaca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtaccgtctaatttgaacacttt 190  Q
    |||||||||||||||| ||| |||||| ||  |||||||| ||||||||| | |||| ||| |||||||| | ||||||||| | ||||||| || ||||    
T  29210922 ggaggcaagcaaataaagtaactcatagcattgctagagcctctttatctaatcctaacccccatattttttatgatgtaccttttaatttgtactcttt 29210823  T
Q  191 at 192  Q
    ||    
T  29210822 at 29210821  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 20537715 - 20537775
Alignment:
Q  92 ggaggcaagcaaataaggtagctcataaca-agctagagcttctttatctcaccctagccc 151  Q
    |||||||||||||||||||||||||||| | |||||||| | | ||||| |||||||||||    
T  20537715 ggaggcaagcaaataaggtagctcataagatagctagagttgccttatcacaccctagccc 20537775  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 36035989 - 36035946
Alignment:
Q  23 ttggtgacattatttttt-attgtaaacaacttttgtctttgca 65  Q
    ||||| |||||||||||| |||||||||||||||||||||||||    
T  36035989 ttggtaacattatttttttattgtaaacaacttttgtctttgca 36035946  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 4741622 - 4741572
Alignment:
Q  123 gctagagcttctttatctcaccctagccctcatattttctgtgatgtaccg 173  Q
    |||||||| ||||||||  |||||||||| |||||||| ||||||||||||    
T  4741622 gctagagcatctttatccaaccctagcccccatattttttgtgatgtaccg 4741572  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 25357656 - 25357717
Alignment:
Q  91 aggaggcaagcaaataaggtagctcataac-aagctagagcttctttatctcaccctagccc 151  Q
    ||||||||||||||||||||||||||||||  |||||||| ||  |||||||| ||||||||    
T  25357656 aggaggcaagcaaataaggtagctcataacttagctagagttttcttatctcatcctagccc 25357717  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 11338460 - 11338407
Alignment:
Q  90 aaggaggcaagcaaataaggtagctcataaca-agctagagcttctttatctca 142  Q
    |||||| ||||||||||||||||||||| |||  ||||||||||| ||||||||    
T  11338460 aaggagacaagcaaataaggtagctcattacatcgctagagcttccttatctca 11338407  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 6292528 - 6292441
Alignment:
Q  84 ctttgtaaggaggcaagcaaataaggtagctcataaca-agctagagcttctttatctcaccctagccctcatattttctgtgatgta 170  Q
    |||||| ||||||||||||||| |||| ||||||  || ||| ||||| || |||||| |||||||||| ||| |||||| |||||||    
T  6292528 ctttgttaggaggcaagcaaatgaggttgctcattccatagcaagagcatccttatctaaccctagcccccatgttttctatgatgta 6292441  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 24010454 - 24010372
Alignment:
Q  91 aggaggcaagcaaataaggtagctcataaca-agctagagcttctttatctcaccctagccctcatattttctgtgatgtacc 172  Q
    |||||||||||||| | |||||||||||||| ||||||| |||| |||||||| |||| |||  |  |||||| |||||||||    
T  24010454 aggaggcaagcaaacagggtagctcataacatagctagaacttccttatctcatcctaacccctaccttttctatgatgtacc 24010372  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 53213200 - 53213152
Alignment:
Q  92 ggaggcaagcaaataaggtagctcataaca-agctagagcttctttatc 139  Q
    ||||| |||||||||||||||||||||||| || ||||||| |||||||    
T  53213200 ggaggtaagcaaataaggtagctcataacatagttagagctgctttatc 53213152  T

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