View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9492_low_9 (Length: 292)
Name: NF9492_low_9
Description: NF9492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9492_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 35941559 - 35941831
Alignment:
| Q |
14 |
tgttgttcataggatatcagatagaattgtaagaaaaggttcaataaataaacatggtagaaattggaaaggtgttgacattttggtattcaacacttat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35941559 |
tgttgttcataggatatcagatagaattgtaagaaaaggttcaataaataaacatggtagaaattggaaaggtgttgacattttggtattcaacacttat |
35941658 |
T |
|
| Q |
114 |
ctttggtggatgactggcttggagatgaaaatcttgtatgttccctcttttgcttagcccttttccatttttattatttgaaaattaatataaagactaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |
|
|
| T |
35941659 |
ctttggtggatgactggcttggagatgaaaatcttgtatgttccctcttttgcttagcccttttccatttttattatttgaaaattaattaata---taa |
35941755 |
T |
|
| Q |
214 |
agtaataatcccttttcaaattttttagacttggatcttttgatgatgaagtaaaagagattgtcacaatttctac |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35941756 |
agtaataatcccttttcaaattttttagacttggatcttttgatgatgaagtaaaagagattgtcacaatttctac |
35941831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 32182391 - 32182480
Alignment:
| Q |
33 |
gatagaattgtaagaaaaggttcaataaataaacatggtagaaattggaaaggtgttgacattttggtattcaacacttatctttggtgg |
122 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| || ||| | |||||||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
32182391 |
gatagaattgtaagaaagggttcaatcaataagcacggtcgttattggaaaggcgcagacattttggtattcaacacctatctttggtgg |
32182480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University