View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9493_3 (Length: 549)
Name: NF9493_3
Description: NF9493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9493_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 19270478 - 19271034
Alignment:
| Q |
1 |
aagccaatcgaataacaaccaacatccacaaagaa-caaaggctgataaacaaaaaccacaataacatattcaccaacaacaacattgcaaagtca-tca |
98 |
Q |
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||||||||||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19270478 |
aagccaatcgaataacaaccaacatccacaaaggagcacaagctgataaacaaaaaccacaataacatattcaccaacaacaacattgcaaagtcaatca |
19270577 |
T |
|
| Q |
99 |
tatcatatcataattactataaaatcccttcaaatccaaaatagtatctgctgcgaaatttattcaaacaccgtctaaatcacaaaacaatcacagcaat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19270578 |
tatcatatcataattactataaaatcccttcaaatccaatcaagtatctgctgcgaaatttattcaaacaccgtctaaatcacaaaacaatcacagcaat |
19270677 |
T |
|
| Q |
199 |
ataaattcaaattcaaattctcaacagaaactaaccaattggtcccggcattgaagccttgcctccagaaccaccatacccataaccatcataaccctcc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19270678 |
ataaattcaaattcaaattctcaacagaaactaaccaattggtcccggcattgaagccttgcctccagaaccaccatacccataaccatcataaccctcc |
19270777 |
T |
|
| Q |
299 |
cttctactcaccttcttcccactactccccccaccaacatcaacatcatcatccatctcatactcctcctcataatactccctcctccctttcttcacca |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19270778 |
cttctactcaccttcttcccactactccccccaccaacatcaacatcatcatccatctcatactcctcctcataatactccctcctccctttcttcacca |
19270877 |
T |
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| Q |
399 |
tcgcaccggcaccg------gcaccagccccagcaggcagatgcccataactataatgcggcacagcagaaggaggagcaacagcagcaggagtagcaac |
492 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
19270878 |
tcgcaccggcaccggcaccagcaccagccccagcaggcagatgtccataactataatgcggcacagcagcagaaggagcaacagcagcaggagtagcaac |
19270977 |
T |
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| Q |
493 |
attacgccgagcaccggccccaccaagaatactcctcacaggaagcagaaagtaaaa |
549 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19270978 |
attacgccgagcaccggccccaccaagaatactcctcacaggaagcagaaagtaaaa |
19271034 |
T |
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