View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9493_7 (Length: 358)

Name: NF9493_7
Description: NF9493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9493_7
NF9493_7
[»] chr8 (16 HSPs)
chr8 (15-358)||(4888655-4888998)
chr8 (97-358)||(4727391-4727653)
chr8 (87-358)||(4682392-4682661)
chr8 (157-358)||(10448568-10448767)
chr8 (99-358)||(4690171-4690427)
chr8 (130-358)||(4737970-4738196)
chr8 (129-358)||(4899768-4900001)
chr8 (132-347)||(4921765-4921979)
chr8 (158-358)||(21438099-21438304)
chr8 (90-239)||(4775024-4775173)
chr8 (174-358)||(4912328-4912510)
chr8 (158-352)||(4874067-4874263)
chr8 (129-358)||(4704705-4704930)
chr8 (130-239)||(4716929-4717038)
chr8 (267-358)||(4922179-4922270)
chr8 (290-358)||(4775216-4775284)


Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 4888655 - 4888998
Alignment:
Q  15 agattcacatcatttaagtaaggtattgagttcaagccttttgaatgaatttattgttataaagagctttttagaaaatctgtctttttcttgaatataa 114  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4888655 agattcacataatttaagtaaggtattgagttcaagccttttgaatgaatttattgttataaagagctttttagaaaatctgtctttttcttgaatataa 4888754  T
Q  115 tgtgaattaatattgctttgagtatgatgcatacctcagtagtagtgaacctgtttttgatctctcaaggagcccacttggaactaaccctgtaagtttg 214  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4888755 tgtgaattaatattgctttgagtatgaggcatacctcagtagtagtgaacctgtttttgatctctcaaggagcccacttggaactaaccctgtaagtttg 4888854  T
Q  215 tttttccctacatttctgctaacacgtaataaataaacatgacacttttcttttatcttttatactaataatgaatgaaattgcatttgattcatcgaca 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4888855 tttttccctacatttctgctaacacgtaataaataaacatgacacttttcttttatcttttatactaataatgaatgaaattgcatttgattcatcgaca 4888954  T
Q  315 tgggacttacaagacttttaatgatcgcagttgcatcagaaaat 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4888955 tgggacttacaagacttttaatgatcgcagttgcatcagaaaat 4888998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 97 - 358
Target Start/End: Complemental strand, 4727653 - 4727391
Alignment:
Q  97 tctttttcttgaatataatgtgaattaatattgctttga------gtatgatgcatacctcagtagtagtgaacctgtttttgatctctcaaggagccca 190  Q
    |||||| |||||||||||||||||||||||| |||||||      |||||| | ||||||||||  || ||||||||||||||||||||||||||| |||    
T  4727653 tcttttgcttgaatataatgtgaattaatatagctttgactttgagtatgaggtatacctcagtgataatgaacctgtttttgatctctcaaggagtcca 4727554  T
Q  191 cttggaactaaccctgtaagtttgtttttccctacatttctgctaacacgtaataaataaacatgacacttttcttttatcttttatactaataatgaat 290  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  || ||| | | ||||||  | | |||||||||||||||||||||| |||    
T  4727553 cttggaactaaccctgtaagtttgttcttccctacatttctgctaacac--aacaaa-atatatgaca--tcttttttatcttttatactaataatcaat 4727459  T
Q  291 gaaattgcatttgattcatcgacatgggacttacaagacttttaatgatcgcagttgcatcagaaaat 358  Q
    |||||| |||||||| |||| ||||||||||||||||| ||||| ||| | ||| |||||||||||||    
T  4727458 gaaattacatttgatgcatcaacatgggacttacaagatttttagtgacctcagctgcatcagaaaat 4727391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 87 - 358
Target Start/End: Complemental strand, 4682661 - 4682392
Alignment:
Q  87 agaaaatctgtctttttcttgaatataatgtgaattaatattgctttgagtatgatgcatacctcagtagtagtgaacctgtttttgatctctcaaggag 186  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| | ||||||||||  || |||||||||||||||||||||||| ||    
T  4682661 agaaaatctgtcgttttcttgaatataatgtgaattaatatagctttgagtatga-ggatacctcagtgataatgaacctgtttttgatctctcaagaag 4682563  T
Q  187 cccacttggaactaaccctgtaagtttgtttttccctacatttctgctaacacgtaa-taaataaacatgacac-ttttcttttatcttttatactaata 284  Q
     ||||||||||||||||| ||||| ||||| ||||| |  |||||||   || | ||  ||| | ||||||||| |||| |||||| |||||||||||||    
T  4682562 tccacttggaactaaccccgtaaggttgttcttccccaggtttctgc---catgaaaggaaaaatacatgacactttttattttattttttatactaata 4682466  T
Q  285 atgaatgaaattgcatttgattcatcgacatgggacttacaagacttttaatgatcgcagttgcatcagaaaat 358  Q
    || ||| || || ||||||||  ||| |||| |||||||||||||||||| ||| |||||||||||||||||||    
T  4682465 ataaatcaatttacatttgatggatcaacataggacttacaagacttttagtgaacgcagttgcatcagaaaat 4682392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 157 - 358
Target Start/End: Complemental strand, 10448767 - 10448568
Alignment:
Q  157 tagtgaacctgtttttgatctctcaaggagcccacttggaactaaccctgtaagtttgtttttccctacatttctgctaacacgtaataaataaacatga 256  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||| | | ||| ||| ||||    
T  10448767 tagtgaacctgtttttgatctctcaaggagtccacttggaactaaccctgtaagtttgttcttccccacatttctgccaacacatgacaaa-aaagatga 10448669  T
Q  257 cacttttcttttatcttttatactaataatgaatgaaattgcatt--tgattcatcgacatgggacttacaagacttttaatgatcgcagttgcatcaga 354  Q
    |||   | ||||| |||||||||||||||| ||||||||| ||||  |||||||| ||||| |||||||||||||||||| ||| |||||||||||||||    
T  10448668 cac---tgttttaccttttatactaataatcaatgaaattacatttgtgattcattgacataggacttacaagacttttagtgaccgcagttgcatcaga 10448572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 99 - 358
Target Start/End: Complemental strand, 4690427 - 4690171
Alignment:
Q  99 tttttcttgaatataatgtgaattaatattgctttgagtatgatgcatacctcagtagtagtgaacctgtttttgatctctcaaggagcccacttggaac 198  Q
    ||||||||||||||||| |||||| ||||  ||||||||| || || |||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  4690427 tttttcttgaatataatatgaattgatataactttgagtaggaggcgtacctcagtgatagtgaacctgtttttgatctctcaaggagtccacttggaac 4690328  T
Q  199 taaccctgtaagtttgtttttccctacatttctgctaacacgtaataaataaacatgacacttttcttttatcttttatactaataatgaatgaaattgc 298  Q
    |||||| ||||| ||||||||||| || |||||||   ||    | ||||||| ||||||    | |||||||||||| | ||||||| |||||||||      
T  4690327 taacccagtaagattgtttttccccacgtttctgccttcaaaggacaaataaatatgaca----ttttttatcttttacattaataatcaatgaaattaa 4690232  T
Q  299 a-tttgattcatcgacatgggacttacaagacttttaatgatcgcagttgcatcagaaaat 358  Q
    | ||| || ||||||| |||||||||||||||||||| ||| |||||||| ||||||||||    
T  4690231 attttaatccatcgacgtgggacttacaagacttttagtgaccgcagttgaatcagaaaat 4690171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 130 - 358
Target Start/End: Complemental strand, 4738196 - 4737970
Alignment:
Q  130 ctttgagtatgatgcatacctcagtagtagtgaacctgtttttgatctctcaaggagcccacttggaactaaccctgtaagtttgtttttccctacattt 229  Q
    |||||||||||| | |||||||||   ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||    
T  4738196 ctttgagtatgaggtatacctcagagatagtgaacctgtttttgatctctcaaggagttcacttggaactaaccctgtaagtttgttcttccctacattt 4738097  T
Q  230 ctgctaacacgtaataaataaacatgacacttttcttttatcttttatactaataatgaatgaaattgcatttgattcatcgacatgggacttacaagac 329  Q
    |||||| ||   |||||| | | |||||| | || |||||| ||||||| ||||| | ||||||||| |||||| | |||| ||||||||||||||| |     
T  4738096 ctgctaccaaagaataaa-atatatgaca-tctttttttatattttatagtaatattcaatgaaattacatttgctgcatcaacatgggacttacaatat 4737999  T
Q  330 ttttaatgatcgcagttgcatcagaaaat 358  Q
    ||||| ||| | ||| |||||||||||||    
T  4737998 ttttagtgacctcagctgcatcagaaaat 4737970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 129 - 358
Target Start/End: Original strand, 4899768 - 4900001
Alignment:
Q  129 gctttgagtatgatgcatacctcagtagtagtgaacctgtttttgatctctcaaggagcccacttggaactaaccctgtaagtttgtttttccctacatt 228  Q
    |||||||||||   |||||||||| |  ||||||||||| |||   ||||||| ||||  ||||||||||||||||||  ||||| || |||||||||||    
T  4899768 gctttgagtatagagcatacctcaatgatagtgaacctgatttatgtctctcatggagttcacttggaactaaccctgagagtttattcttccctacatt 4899867  T
Q  229 tctgctaacacgtaataaataaacatgacacttttctttt----atcttttatactaataatgaatgaaattgcatttgattcatcgacatgggacttac 324  Q
    ||||| ||||| | | ||||||| |  ||| |||| ||||    ||||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||    
T  4899868 tctgcgaacacatgacaaataaatacaacagtttttttttttttatcttttatgctaataatcaatgaaattacatttgattcatcaacatgggacttac 4899967  T
Q  325 aagacttttaatgatcgcagttgcatcagaaaat 358  Q
    ||||||||||  ||||| ||||||||||||||||    
T  4899968 aagacttttagcgatcgtagttgcatcagaaaat 4900001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 132 - 347
Target Start/End: Original strand, 4921765 - 4921979
Alignment:
Q  132 ttgagtatgatgcatacctcagtagtagtgaacctgtttttgatctctcaaggagcccacttggaactaaccctgtaagtttgtttttccctacatttct 231  Q
    |||||||| | ||||||||||||  |||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||||| || |  ||||||||    
T  4921765 ttgagtataaggcatacctcagtgatagtgaacttgtttttgatctcgcaaggagttcacttggaactaaccctgtaagtttgttctttctcacatttct 4921864  T
Q  232 gctaacacgtaataaataaacatgacacttttcttttatcttttatactaataatgaatgaaattgcatttgattcatcgacatgggacttacaagactt 331  Q
    |||||||| | | ||||||| || ||| |||| ||| |||||||||||||| | | || |||||| ||||||||  ||| ||||||||||||||| || |    
T  4921865 gctaacacatgacaaataaatataaca-ttttttttaatcttttatactaaaagtcaacgaaattacatttgatctatcaacatgggacttacaatacat 4921963  T
Q  332 ttaatgatcgcagttg 347  Q
    ||| |||| |||||||    
T  4921964 ttagtgatggcagttg 4921979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 158 - 358
Target Start/End: Original strand, 21438099 - 21438304
Alignment:
Q  158 agtgaacctgtttttgatctctcaaggagcccacttggaactaaccctgtaagtttgtttttccctacatttctgctaacacgtaataaataaacatgac 257  Q
    ||||||||||||||   ||||||||||||  |||||||||| |||||| |||||||||| ||||  |||||||||| ||||| | | ||||||| |||||    
T  21438099 agtgaacctgttttatgtctctcaaggagttcacttggaacaaaccctctaagtttgttcttcctcacatttctgccaacacatgacaaataaatatgac 21438198  T
Q  258 acttttctttt-----atcttttatactaataatgaatgaaattgcatttgattcatcgacatgggacttacaagacttttaatgatcgcagttgcatca 352  Q
    || ||| ||||     ||||||||| |||||||| ||||||||| |||||||||||||| |||||||||||||||||||  | |||| ||||||||| ||    
T  21438199 acatttttttttatatatcttttatgctaataatcaatgaaattacatttgattcatcggcatgggacttacaagacttgcagtgattgcagttgcacca 21438298  T
Q  353 gaaaat 358  Q
    ||||||    
T  21438299 gaaaat 21438304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 4775024 - 4775173
Alignment:
Q  90 aaatctgtctttttcttgaatataatgtgaattaatattgctttgagtatgatgcatacctcagtagtagtgaacctgtttttgatctctcaaggagccc 189  Q
    |||||||||||||||  ||||||||| |||||| |||| ||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||  |    
T  4775024 aaatctgtctttttcaagaatataatatgaattgatatagctttgagtatgaggcataccttagtgatagtgaacctgtttttgatctctcaaggagttc 4775123  T
Q  190 acttggaactaaccctgtaagtttgtttttccctacatttctgctaacac 239  Q
    |||||||||||| || ||||| ||||| ||||| || |||||| ||||||    
T  4775124 acttggaactaatccagtaagattgttcttccccacgtttctggtaacac 4775173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 174 - 358
Target Start/End: Original strand, 4912328 - 4912510
Alignment:
Q  174 atctctcaaggagcccacttggaactaaccctgtaagtttgtttttccctacatttctgctaacacgtaataaataaacatgacacttttcttttatctt 273  Q
    |||||||||||||  || ||||||||| ||||| ||||||||| ||||  |||| ||||| ||||| | | ||||||| |||| |||||| ||||  |||    
T  4912328 atctctcaaggagttcagttggaactagccctgaaagtttgttcttcctcacatctctgccaacacatgacaaataaatatgaaacttttttttt--ctt 4912425  T
Q  274 ttatactaataatgaatgaaattgcatttgattcatcgacatgggacttacaagacttttaatgatcgcagttgcatcagaaaat 358  Q
    |||| |||||||| ||||||||| | |||||||||||| |||||||||||||||||||||| |||||||| |||| |||||||||    
T  4912426 ttatgctaataatcaatgaaattacgtttgattcatcggcatgggacttacaagacttttagtgatcgcatttgcgtcagaaaat 4912510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 352
Target Start/End: Original strand, 4874067 - 4874263
Alignment:
Q  158 agtgaacctgtttttgatctctcaaggagcccacttggaactaaccctgtaagtttgtttttccctacatttctgctaacacgtaataaataaacatgac 257  Q
    ||||||||  |||||||||| |||||||| ||| ||||||||| |||| ||||||  || || || || ||||| | |||||   | ||||||| |||||    
T  4874067 agtgaaccattttttgatctttcaaggagtccagttggaactatccctctaagttgattctttcccacgtttcttcaaacacaagacaaataaatatgac 4874166  T
Q  258 acttttcttttatcttttatactaat----aatgaatgaaattgcatttgattc-atcgacatgggacttacaagacttttaatgatcgcagttgcatca 352  Q
    ||    ||||||||||||||||||||    ||| ||||||||| ||||| | || || ||||||||||||||||||||||||||||| ||||||||||||    
T  4874167 acc---cttttatcttttatactaattaataatcaatgaaattacattttaatccattgacatgggacttacaagacttttaatgattgcagttgcatca 4874263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 129 - 358
Target Start/End: Complemental strand, 4704930 - 4704705
Alignment:
Q  129 gctttgagtatgatgcatacctcagtagtagtgaacctgtttttgatctctcaaggagcccacttggaactaaccctgtaagtttgtttttccctacatt 228  Q
    ||||| |||| || ||||||||||||  ||||||||||| |||  |||| || |||||  ||||||| |||||||||  ||||||||| ||||| |||||    
T  4704930 gcttttagtacgaggcatacctcagtgatagtgaacctgatttatatctatcgaggagttcacttgggactaaccctacaagtttgttcttccccacatt 4704831  T
Q  229 tctgctaacacgtaataaataaacatgacacttttcttttatcttttatactaataatgaatgaaattgcatttgattcatcgacatgggacttacaaga 328  Q
    |||||||||||  || ||| | | ||||||  | | ||||||| |||||| ||| |||  |||||||| ||||| |  |||| ||||||||| |||||||    
T  4704830 tctgctaacacagaacaaa-atatatgaca--tcttttttatc-tttataataaaaatcgatgaaattacatttaacgcatcaacatgggacatacaaga 4704735  T
Q  329 cttttaatgatcgcagttgcatcagaaaat 358  Q
    ||||||  || ||||||||  |||||||||    
T  4704734 cttttagagaccgcagttgtgtcagaaaat 4704705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 4717038 - 4716929
Alignment:
Q  130 ctttgagtatgatgcatacctcagtagtagtgaacctgtttttgatctctcaaggagcccacttggaactaaccctgtaagtttgtttttccctacattt 229  Q
    |||| ||||||| ||||||||||||  ||||||||||| ||||||||| |||||||   || |||| |||||||||  |||||| || ||||| ||||||    
T  4717038 cttttagtatgaggcatacctcagtgatagtgaacctgattttgatctatcaaggaattcaattgggactaaccctacaagtttattcttccccacattt 4716939  T
Q  230 ctgctaacac 239  Q
    ||||||||||    
T  4716938 ctgctaacac 4716929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 358
Target Start/End: Original strand, 4922179 - 4922270
Alignment:
Q  267 ttatcttttatactaataatgaatgaaattgcatttgattcatcgacatgggacttacaagacttttaatgatcgcagttgcatcagaaaat 358  Q
    |||| ||||||||| ||||| || |||||| |||||||| |||| | ||||||||||||||||||||| |||  ||||||| ||||||||||    
T  4922179 ttatgttttatactgataatcaaagaaattacatttgatgcatcaatatgggacttacaagacttttagtgactgcagttgtatcagaaaat 4922270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 4775216 - 4775284
Alignment:
Q  290 tgaaattgcatttgattcatcgacatgggacttacaagacttttaatgatcgcagttgcatcagaaaat 358  Q
    ||||||| |||||||| |||| ||||| |||||||||||||| || ||| || ||||| ||||||||||    
T  4775216 tgaaattacatttgatgcatcaacatgtgacttacaagacttgtagtgaccgaagttgtatcagaaaat 4775284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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