View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9493_low_2 (Length: 522)
Name: NF9493_low_2
Description: NF9493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9493_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 46 - 508
Target Start/End: Complemental strand, 38875573 - 38875111
Alignment:
| Q |
46 |
tcatgatcatagtttaagaatgataagtaaatattatatagtttaataatgatatactatgtagcaccaattcttcacattgaagttgtgtccgacatgt |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38875573 |
tcatgatcatagtttaagaatgataagtaaatattatatagtttaataatgatatactatgtagcatcaattcttcacattgaagttgtgtccgacatgt |
38875474 |
T |
|
| Q |
146 |
gttggtgacatacatcgtcaagacaccgacacatttgattacattcctattttgctagattttacatccctatgaacaatagaaacaacactatcataat |
245 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38875473 |
gttggtgacatatatcgtcaagacaccgacacatttgattacattcctattttgctagattttacatccctatgaacaataagaacaacactatcataat |
38875374 |
T |
|
| Q |
246 |
gcaaataagaaagtcccccagcagcatcaacaacaattttaagtctagttggccaatccaacaaattcttcttgctactatgcaaagaagaatggttagg |
345 |
Q |
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| T |
38875373 |
gcaaataagaaagtcccccagcagcatctacaacaattttaagtctagttagccaatccaacaaattcttcttgctactatgcaaagaagaatggttagg |
38875274 |
T |
|
| Q |
346 |
cattatagaggagcctaatcttagttaggcatggcaaagtacatatagnnnnnnngtaacaacaataaatctcgtcgtctacttcgcccctgaccctcca |
445 |
Q |
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| T |
38875273 |
cattatagaggagcctaatcttagttaggcatggcaaagtacatatagtttttttgtaacaacaataaatctcgtcgtctacttcgcccctggccctcca |
38875174 |
T |
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| Q |
446 |
cgacacttttctgctgtctcacagcctctttgatatgtgtttgccggtttctggttgcagctg |
508 |
Q |
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| T |
38875173 |
cgacacttttcttctgtctcacagcctctttgatatgtgtttgtcggtttctggttgcagctg |
38875111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 46 - 424
Target Start/End: Complemental strand, 38872417 - 38872031
Alignment:
| Q |
46 |
tcatgatcatagtttaagaatgataagtaaatattatatagtttaataatgatatactatgtagcaccaattcttcacattgaagttgtgtccgacatgt |
145 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||||||||| |
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| T |
38872417 |
tcatgatcatagtttaaga----taagtaaatattatatagtttaataatgatatactatgttgcatcatttcttcacattgatgttgtgtccgacatgt |
38872322 |
T |
|
| Q |
146 |
gttggtgacatacatcgtcaagacaccgacacatttgattacattcctattttgctagattttacatcc--------------ctatgaacaatagaaac |
231 |
Q |
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| T |
38872321 |
gttggtgacatacatcatcaagaca-cgacatatttgattacatctctattttgctagattctacatccctatgattcataggctatgaacaataggaac |
38872223 |
T |
|
| Q |
232 |
aacactatcataatgcaaataagaaagtcccccagcagcatcaacaacaattttaagtctagttggccaatccaacaaattcttcttgctactatgcaaa |
331 |
Q |
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||||| ||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||||| |
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| T |
38872222 |
aacacaatcatgatgcaaataagaaagtccctcaacagcatcaacagcaattttaagtctagtt-gtcaatccaacaaattcttcttgttactatgcact |
38872124 |
T |
|
| Q |
332 |
gaagaatggttaggcattatagaggagcctaatcttagttaggcatggcaaagtacatatagnnnnnnngtaacaacaataaatctcgtcgtc |
424 |
Q |
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| T |
38872123 |
gaagaatggttgggcattataacggagcctaatcttagttcggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtc |
38872031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 200 - 330
Target Start/End: Complemental strand, 38868345 - 38868215
Alignment:
| Q |
200 |
ctagattttacatccctatgaacaatagaaacaacactatcataatgcaaataagaaagtcccccagcagcatcaacaacaattttaagtctagttggcc |
299 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |
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| T |
38868345 |
ctagattttacatccctatgaacaataggaacaacacaatcatggtgcaaataagaaagtccctcagcagcatcaacagcaattttaagtcttgttggcc |
38868246 |
T |
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| Q |
300 |
aatccaacaaattcttcttgctactatgcaa |
330 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
38868245 |
aatccaacaaattcttcttgctactatgcaa |
38868215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 393
Target Start/End: Original strand, 38782527 - 38782574
Alignment:
| Q |
346 |
cattatagaggagcctaatcttagttaggcatggcaaagtacatatag |
393 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
38782527 |
cattatagcggagcctaatcttagttaggcatgacaaagtacatatag |
38782574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 434
Target Start/End: Original strand, 38786150 - 38786238
Alignment:
| Q |
346 |
cattatagaggagcctaatcttagttaggcatggcaaagtacatatagnnnnnnngtaacaacaataaatctcgtcgtctacttcgccc |
434 |
Q |
| |
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||||| || |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |||| |
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| T |
38786150 |
cattacagcggagcctaatcttaattaggcatgacaaagtacatatagtttttctataacaacaataaatcccgtcgtctactttgccc |
38786238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 38869219 - 38869168
Alignment:
| Q |
54 |
atagtttaagaatgataagtaaatattatatagtttaataatgatatactat |
105 |
Q |
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|||||||||||||| ||||||||||| |||||||||||| |||||| ||||| |
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| T |
38869219 |
atagtttaagaatgttaagtaaatataatatagtttaatgatgatagactat |
38869168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 38778189 - 38778234
Alignment:
| Q |
346 |
cattatagaggagcctaatcttagttaggcatggcaaagtacatat |
391 |
Q |
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| T |
38778189 |
cattatagaggagcctaatcttagttaggcatgatcaagtacatat |
38778234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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