View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9494_1 (Length: 667)
Name: NF9494_1
Description: NF9494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9494_1 |
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Alignment Details
Target: chr3 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 26 - 638
Target Start/End: Original strand, 52240070 - 52240673
Alignment:
| Q |
26 |
cacctgtgagaattgaaacaaatcttaaatccattaactaaacaactgcaaacaagaataacatgagattcctcattcaagcgtattcaaattatcaaca |
125 |
Q |
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| T |
52240070 |
cacctgtgagaattgaaacaaatcttaaatccattaactaaacaactgcaaacaagaataacatgagattcctcattcaagcgtattcaaattatcaaca |
52240169 |
T |
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| Q |
126 |
tccttttaataatgtgagtgtcttcttcagctgcgacagcacttacatcattatttacccttacagctcctttctgcttgtacttataaccctgaagtcg |
225 |
Q |
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| T |
52240170 |
tccttttaataatgtgagtgtcttcttcagctgcgacagcacttacatcattatttacctttacagctcctttct---------tataaccctgaagtcg |
52240260 |
T |
|
| Q |
226 |
agattttgtgtcaactttaggttttgttacagcttcttgattgattatttgagcaaattctttgaccttccctttaacccggccttttcccatacttctg |
325 |
Q |
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| T |
52240261 |
agattttgtgtcaactttaggttttgttacagcttcttgattgaatatttgagcaaattctttgaccttccctttaacccggccttttcccatacttctg |
52240360 |
T |
|
| Q |
326 |
cctgggcttaatgaacctcggggagtagctttgctatattctacacctctcatagaaactgtcttttgcttttcatcttccttctttggattcataggaa |
425 |
Q |
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| T |
52240361 |
cctgggcttaatgaacctcggggagtagctttgctatattctacacctctcatagaaactgtcttttgcttttcatcttccttctttggattcataggaa |
52240460 |
T |
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| Q |
426 |
tatcaaaactatttgagcttttcgccatgtttgcttctctcgactttctggttatcttatcataatctgacataaaactattgacagttatcacagtgtg |
525 |
Q |
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| T |
52240461 |
tatcaaaactatttgagcttttcgccatgtttgcttctctcgactttctggttatcttatcataatctgacataaaactattgacagttatcacagtgtg |
52240560 |
T |
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| Q |
526 |
gcaaacctcgcacacaaagatagaaagaagaatgccaaagatagctttaccttgtttcttactatttttaccgaacagagaatgtaatgatttgggctca |
625 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52240561 |
gcaaacctcacacacaaagatagaaagaagaatgccaaagatagctttaccttgtttcttactatttttaccgaacagagaatgtaatgatttgggctca |
52240660 |
T |
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| Q |
626 |
tgtttgtgagttt |
638 |
Q |
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| T |
52240661 |
tgtttgtgagttt |
52240673 |
T |
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