View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9494_2 (Length: 568)
Name: NF9494_2
Description: NF9494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9494_2 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 46680751 - 46681316
Alignment:
| Q |
1 |
ctggaggtgcattaacaagaggataatacatgccaagagagttcaacgtcatagtagctccaactccatcatactttttgctctttaaaggagatagact |
100 |
Q |
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| T |
46680751 |
ctggaggtgcattaacaagaggataatacatgccaagagagttcaacgtcatagtagctccaactccatcatactttttgctctttaaaggagatagact |
46680850 |
T |
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| Q |
101 |
attgaggtagtcaaacaaagcatcatcctgcataaaaatatgagnnnnnnnnn-ctaaaggcaacaagaatactaggagatcaatagcacagctcaagtg |
199 |
Q |
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| T |
46680851 |
attgaggtagtcaaacaaagcatcatcctgcataaaaatatgagaaaaaaaaaactaaaggcaacaagaatactaggagatcaatagcacagctcaagtg |
46680950 |
T |
|
| Q |
200 |
ggccacaaaatttatgttgcaataagcattgagtacaaatttgtttatcaaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgatt |
299 |
Q |
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| T |
46680951 |
ggccacaaaatttatgttgcaataagcattgagtacaaatttgtttatcaaaaaattaaactacacgccttaaaatattaaaataattctcgatctgatt |
46681050 |
T |
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| Q |
300 |
aaagtaacttaaaatcatcaataataatagacttcaaactaatatttgcattaaaattcacctttcaatataaatagtcatgctatcatttagaaaccaa |
399 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46681051 |
aaagtaacttaaaatcatcaata---atagacttaaaactaatatttgcactaaaattcacctttcaatataaatagtcatgctatcatttagaaaccaa |
46681147 |
T |
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| Q |
400 |
cctccctttcaacatggtgttatgctattacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattc |
499 |
Q |
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| T |
46681148 |
cctccctttcaatatggtgttatgctattacatatagtttcatgctgctaccttttctttactttcctgctaatacgtatagtttgaaattcatacattc |
46681247 |
T |
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| Q |
500 |
aaaagggttccctgcttcatctaatctaatttaatattttctcaaatcaaactacctccaaacaaacga |
568 |
Q |
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| T |
46681248 |
aaaagggttccctgcttcatctaatctaatttaatattttctcaaatcaaactacctccaaacaaacga |
46681316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 428 - 568
Target Start/End: Original strand, 46696389 - 46696529
Alignment:
| Q |
428 |
tacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaatcta |
527 |
Q |
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| T |
46696389 |
tacatatagtttcatgctgctaccttttctttactttcctgctactaagtatagtttgaaattcatacattcagaagggttccccgcttcatctaatcta |
46696488 |
T |
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| Q |
528 |
atttaatattttctcaaatcaaactacctccaaacaaacga |
568 |
Q |
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| T |
46696489 |
atttaatattttctcaaatcaaactacctccaaacaaacga |
46696529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 46696146 - 46696273
Alignment:
| Q |
17 |
aagaggataatacatgccaagagagttcaacgtcatagtagctccaactccatcatactttttgctctttaaaggagatagactattgaggtagtcaaac |
116 |
Q |
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||||| ||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46696146 |
aagagaataatccatgccaagcgagttcaacgtcgtagtagctccaactccatcatactttttgctctttaaaggagatagactattaaggtagtcaaac |
46696245 |
T |
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| Q |
117 |
aaagcatcatcctgcataaaaatatgag |
144 |
Q |
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| T |
46696246 |
aaagcatcatcctgcataaaaatatgag |
46696273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 46705458 - 46705569
Alignment:
| Q |
33 |
ccaagagagttcaacgtcatagtagctccaactccatcatactttttgctctttaaaggagatagactattgaggtagtcaaacaaagcatcatcctgc- |
131 |
Q |
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||||| |||||||||||| |||||||||||||||| ||||||||||| | ||||||||||||||| ||| |||||||||||| |||| |||||||||| |
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| T |
46705458 |
ccaagtgagttcaacgtctcagtagctccaactccaacatactttttggtgtttaaaggagatagagtatcgaggtagtcaaagaaagaatcatcctgca |
46705557 |
T |
|
| Q |
132 |
ataaaaatatga |
143 |
Q |
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|||||||||||| |
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| T |
46705558 |
ataaaaatatga |
46705569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 365 - 427
Target Start/End: Original strand, 46696295 - 46696357
Alignment:
| Q |
365 |
caatataaatagtcatgctatcatttagaaaccaacctccctttcaacatggtgttatgctat |
427 |
Q |
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| T |
46696295 |
caatataaattgtcacgctatcatttagaaaccaacctccctttcaatatggtgttatgctat |
46696357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 20256380 - 20256457
Alignment:
| Q |
246 |
atcaaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgattaaagtaacttaaaatcatcaataa |
323 |
Q |
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| T |
20256380 |
atcaaaaaattaaactacataccttaaaaaattaaaataattatttacgcgatctaactaacttaaaatcatcaataa |
20256457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 397
Target Start/End: Original strand, 15667110 - 15667255
Alignment:
| Q |
246 |
atcaaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgattaaagtaacttaaaatcatcaataataatagacttcaaactaatatt |
345 |
Q |
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||||||||| ||||||||| |||||||| |||||||||| | | ||| ||| || |||||| ||||||||||||||| ||| |||||||| | |
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| T |
15667110 |
atcaaaaaagtaaactacataccttaaaaaattaaaataagtttttatgcgatccaactaacttgaaatcatcaataata----actcagaactaatact |
15667205 |
T |
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| Q |
346 |
tgcattaaaattcacctttcaatataaatagtcatgctatcatttagaaacc |
397 |
Q |
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|||| | |||| |||||| ||||||| |||||||||||||||||||||| |
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| T |
15667206 |
tgcact--aatttccctttcgatataaaccgtcatgctatcatttagaaacc |
15667255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 30703988 - 30703938
Alignment:
| Q |
249 |
aaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgatt |
299 |
Q |
| |
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| T |
30703988 |
aaaaaattaaactacacatgttaaaaaattaaaataatactcaatgtgatt |
30703938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 601950 - 601902
Alignment:
| Q |
251 |
aaaattaaactacacgccttaaaatattaaaataattctcaatgtgatt |
299 |
Q |
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||||||||| |||||||| ||||| |||||||||||||||||| |||| |
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| T |
601950 |
aaaattaaaatacacgccctaaaaatttaaaataattctcaatgcgatt |
601902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 28313390 - 28313354
Alignment:
| Q |
361 |
ctttcaatataaatagtcatgctatcatttagaaacc |
397 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| |
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| T |
28313390 |
ctttcaatataaaccgtcatgctatcatttagaaacc |
28313354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 3708217 - 3708172
Alignment:
| Q |
280 |
aaataattctcaatgtgattaaagtaacttaaaatcatcaataata |
325 |
Q |
| |
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||||||||| |||||||||| |||||||||| ||||||||||||| |
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| T |
3708217 |
aaataattcacaatgtgattttagtaacttaatatcatcaataata |
3708172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 12055156 - 12055193
Alignment:
| Q |
360 |
cctttcaatataaatagtcatgctatcatttagaaacc |
397 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
12055156 |
cctttcaatataaaccgtcatgctatcatttagaaacc |
12055193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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