View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9494_3 (Length: 348)
Name: NF9494_3
Description: NF9494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9494_3 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 21804509 - 21804716
Alignment:
| Q |
9 |
gagatgaacaaaaacaccaagaccaaggaacatatatgaatttgaataaaccattttgcttattggagaatgaaaatgcaatgtttgataaataatatgt |
108 |
Q |
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| T |
21804509 |
gagaagaacaaaaacaccaagaccaaggaacatatatgaatttgaataaaccattttgcttattggagaatgaaaatgcaatgtttgataaataatatgt |
21804608 |
T |
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| Q |
109 |
agtctctatatatagggttaaaagatgacttatttatggagccaagagtcaatttaaattagttaaattaaacaaatgtgaccatataaacctctaaaga |
208 |
Q |
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| T |
21804609 |
agtctctatatatagggttaaaagatgacttatttatggagccaagagtcaatttaaattagttaaattaaacaaatgtgaccatataaacttctaaaga |
21804708 |
T |
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| Q |
209 |
aaatgtac |
216 |
Q |
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|||||||| |
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| T |
21804709 |
aaatgtac |
21804716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 303 - 348
Target Start/End: Original strand, 21804803 - 21804848
Alignment:
| Q |
303 |
ctaaaattaaaaatgaaatctagctgtaaaatgttcatacgttttc |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21804803 |
ctaaaattaaaaatgaaatctagctgtaaaatgttcatacgttttc |
21804848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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