View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9494_low_1 (Length: 1030)
Name: NF9494_low_1
Description: NF9494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9494_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 488 - 1021
Target Start/End: Complemental strand, 29841558 - 29841020
Alignment:
| Q |
488 |
caccattctttgacttacacctttcaagaaagtcaacattttcataagatttgcaaattcatagtatttgatcatttgtcaccattgagatggttagaat |
587 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841558 |
cacccttctttgacttacacctttcaagaaagtcaacattttcataagatttgcaaattcatagtatttgatcatttgtcaccattgagatggttagaat |
29841459 |
T |
|
| Q |
588 |
gagtttgtgtcacttttatgttttctgttctccaagaagagtccactagtggaagttggtattcatctggtttcaatgccaaggaaaattcaggcaatgt |
687 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841458 |
gagtttgtgtcacttttatgttttctgttctccaagaagagtccactagtggaagttggtattcatctggtttcaatgccaaggaaaattcaggcaatgt |
29841359 |
T |
|
| Q |
688 |
tggagctgtctccatgatcctgttataaaatataaaatattgttttcattagtcctcttctttttcatttaccacaagaatgattattaaattgcagtta |
787 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841358 |
tggagctgtctccatgatcctgttataaaatataaaatattgttttcattagtcctcttctttttcatttaccacaagaatgattattaaattgcagtta |
29841259 |
T |
|
| Q |
788 |
ggtaacaaggttagtcatgaaatcgggaaaatttacctttcgtgagtgtatagatcgcggtttattcgcaccttgcttgaagtatccttaggaatttttt |
887 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841258 |
ggaaacaaggttagtcatgaaatcgggaaaatttacctttcgtgagtgtatagatcacggtttattcgcaccttgcttgaagtatccttaggaatttttt |
29841159 |
T |
|
| Q |
888 |
cagagagatatttcatggtcccccaaagtggtggatttctgcatcatgactgcaagttagatggaccataatacagcacaagaccggcattatagtatag |
987 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841158 |
cagagagatatttcatggtcccccaaagtggtggatttctgcatcatgactgcaagttagatggaccataatacagcacaagaccggcattatagtatag |
29841059 |
T |
|
| Q |
988 |
-----tataagaaaccactgtcatgataattctcaatga |
1021 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
29841058 |
tatagtataagaaaccactgtcatgataattctcaatga |
29841020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 488 - 979
Target Start/End: Original strand, 29829977 - 29830471
Alignment:
| Q |
488 |
caccattctttgacttacacctttcaagaaagtcaacattttcataagatttgcaaattcatagtatttgatcatttgtcaccattgagatggttagaat |
587 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29829977 |
cacccttctttgacttgcacctttcaagaaagtcaacattttcataagatttgcaaattcctagtatttgatcatttgtcaccattgagatggttagaat |
29830076 |
T |
|
| Q |
588 |
gagtttgtgtcacttttatgttttctgttctccaagaagagt-ccactagtggaagttggtattcatctggtttcaatgccaaggaaaattcaggcaatg |
686 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
29830077 |
gagtttgtgtcaattttatgttctcagttctccaagaagagtcccactggtggaagttgatattcatctggtttcaatgccaaggaaaattcaggcaaag |
29830176 |
T |
|
| Q |
687 |
ttggagctgtctccatgatcctgttataaaatata-aaatattgttttcattagtcctcttctttttcatttaccacaagaatgattattaaattgcagt |
785 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | | ||||| || | |||||||| ||||||||||| ||| ||||||||||| || | |||||| |
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| T |
29830177 |
ttggagctgtctccatgatcctgtcgtaaaatacagcagtattgcttacgttagtccttttctttttcatgtactacaagaatgatcatcagattgcaaa |
29830276 |
T |
|
| Q |
786 |
taggtaacaaggttagtcatgaaatcgggaaaatttacctttcgtgagtgtatagatcgcggtttattcgcaccttgcttgaagtatccttaggaa-ttt |
884 |
Q |
| |
|
|||| ||| || ||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |
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|
| T |
29830277 |
taggaaaccagattagtcatgaactctggaaaatttacctttcgtgggtgtacagatcgcggtttattcgcaccttgcttgaagtatccttgggaatttt |
29830376 |
T |
|
| Q |
885 |
tttcagagagatatttcatggtcccccaaagtggtggatttctgcatcatgactgcaagttagatggaccataatacagcacaagaccggcatta |
979 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
29830377 |
tttcagaaagatatttcatggtcccccaaagtggtggatttctgcatcatgactgcaagttagatgggccataatacagcacgagaccggcatta |
29830471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 136 - 425
Target Start/End: Complemental strand, 29841911 - 29841621
Alignment:
| Q |
136 |
gatgatcaacattccgaatattccattcaatcacaaaaccacctcttagtgaaaatacataggtttttctttacacactttgcgcttgtattatacttgt |
235 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29841911 |
gatgatcaacattccgaatatttcattcaatcacaaaaccacctcttcgtgaaaatacataggtttttctttacacactttgtgcttgtattatacttgt |
29841812 |
T |
|
| Q |
236 |
ttcgctacaattcacaagtcaattttacacacaaccacttgcaaaaattctgtatactaaatcaatgatgtaactgtcttta-tttattggtatatattg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
29841811 |
ttcgctacaattcacaagtcaattttacacacaaccacttgcaaaaattctgtatactaaatgaatgatgtaactgtctttattttattggtatatattg |
29841712 |
T |
|
| Q |
335 |
ggaaggatcccctttctttttccctgagtgtcaaatttttattaaagccaatggaagctctactttcaaggtatctttgaattatgtgatc |
425 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841711 |
ggaaggatcccctttctttttccttgagtgtcaaattttcattaaagccaatggaagctctactttcaaggtatctttgaattatgtgatc |
29841621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 136 - 422
Target Start/End: Original strand, 29829573 - 29829861
Alignment:
| Q |
136 |
gatgatcaacattccgaatattccattcaatcacaaaaccacctcttagtgaaaatacataggtttttcttt--acacactttgcgcttgtattatactt |
233 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||| ||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||| |
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|
| T |
29829573 |
gatgatcaacattctgaatattccattcaaccacaaaaccaactcttggtgaaaatacataggtttttttttccacacactttgtgcttgtattatactt |
29829672 |
T |
|
| Q |
234 |
gtttcgctacaattcacaagtcaattttacacacaaccacttgcaaaaattctgtatactaaatcaatgatgtaactgtctttatttattggtatatatt |
333 |
Q |
| |
|
||||| | |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |
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|
| T |
29829673 |
gtttcaccccaatgcacaggtcaattttacacacaaccacttgcaaaaattctgtatattaaatgaatgatgtaactgactttatttattggtatatatt |
29829772 |
T |
|
| Q |
334 |
gggaaggatcccctttctttttccctgagtgtcaaatttttattaaagccaatggaagctctactttcaaggtatctttgaattatgtg |
422 |
Q |
| |
|
| ||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
29829773 |
gagaaggatcccctttccttttccttgagtgtcaaattttcattaaagccaatggaagttctactttcaaggtatctttgaattatgtg |
29829861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 29842054 - 29841964
Alignment:
| Q |
48 |
tgaatggctccatgcagaggttaggtatatgaaatcaattcatataaaaagcggaatccatgtactcaatcacaaaagtagcttggaggat |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29842054 |
tgaatggctccatgcagaggttaggtatatgaaatcaattcgtataaaaagcggaatccatgtactcaatcacaaaagtagcttggaggat |
29841964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 29829447 - 29829509
Alignment:
| Q |
76 |
atgaaatcaattcatataaaaagcggaatccatgtactcaatcacaaaagtagcttggaggat |
138 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29829447 |
atgaaatcaattcgtataaaaagcggaatcaatgtactcaatcacaaaagtagcttggaggat |
29829509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 6e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 818 - 953
Target Start/End: Original strand, 34623877 - 34624012
Alignment:
| Q |
818 |
atttacctttcgtgagtgtatagatcgcggtttattcgcaccttgcttgaagtatccttaggaattttttcagagagatatttcatggtcccccaaagtg |
917 |
Q |
| |
|
|||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
34623877 |
atttacctctcgtaagtatatagatcacggtttattcgcaccttgcttgaagtatccttgggaattttctcagagagatatttcatggtcccccaaagcg |
34623976 |
T |
|
| Q |
918 |
gtggatttctgcatcatgactgcaagttagatggac |
953 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
34623977 |
gtggatttctgcatcatgactgcatgttaggtggac |
34624012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 608 - 716
Target Start/End: Original strand, 34623642 - 34623750
Alignment:
| Q |
608 |
ttttctgttctccaagaagagtccactagtggaagttggtattcatctggtttcaatgccaaggaaaattcaggcaatgttggagctgtctccatgatcc |
707 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||| || |||||||||||||| ||||||| ||| |||||||||||||| ||||| |||||||| | |
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| T |
34623642 |
ttttctgttctccaagaaggactcacttgtggaagttgataatcatctggtttcaaggccaaggcaaaatcaggcaatgttggtgctgtttccatgattc |
34623741 |
T |
|
| Q |
708 |
tgttataaa |
716 |
Q |
| |
|
||| ||||| |
|
|
| T |
34623742 |
tgtaataaa |
34623750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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