View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9495_3 (Length: 444)
Name: NF9495_3
Description: NF9495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9495_3 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 5313296 - 5313733
Alignment:
| Q |
1 |
aaactctcgtaaatcatcttgtcaaagataacatcttgattgtgttaaaactcaaaatat----agtagaaaactacttgattgtgtatcagtgaaaata |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5313296 |
aaactctcgtaaatcatcttgtcaaagataacatcttgattgtgttaaaactcaaaatatatatagtagaaaactacttgattgtgtatcagtgaaaata |
5313395 |
T |
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| Q |
97 |
aagaaaagaattattctcaaaatctagagttccaacgagctctttacaatccttcatagagatacttaagaaaattgacaaaagaaataacaataataaa |
196 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5313396 |
aagaaaagaagtattctcaaaatctagagttccaacgagctctttacaatccttcatagagatacttaaggaaattgacaaaagaaataacaataataaa |
5313495 |
T |
|
| Q |
197 |
taaattagatggacgactgcataacaccgttttgtagaatctcttcactatgcctttttcaagtcagcaatttcatattttttagcagcatccaatagct |
296 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| ||| |
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| T |
5313496 |
taaattagatggacaactgcataacaccgttttgtagaatctcttcac-atgactttttcaagtcagcaatttcatattttt--------tccaatggct |
5313586 |
T |
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| Q |
297 |
cacacatatactttctaaattcttcttcaatacagataactgattaatgcttgacaaacttcaaatgacatgtctggtatgtttatagtagttggttgtt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5313587 |
cacacatatactttctaaattcttcttcaatacagataactgattaatgcttgacaaacttcaaatgacatgtcaggtatgtttatagtagttggttgtt |
5313686 |
T |
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| Q |
397 |
cctttttcttctcagaaattacaaacatgcgttctaaaactgctgac |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5313687 |
cctttttcttctcagaaattacaaacatgcgttctaaaactgctgac |
5313733 |
T |
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