View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9495_4 (Length: 363)
Name: NF9495_4
Description: NF9495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9495_4 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 73813 - 74171
Alignment:
| Q |
1 |
taaataccttccgaaaaatggaaacagttttgcaacaaaaattaacaattaaccattaccttatctgttgaaccaatttactacctcatcaaatctaaca |
100 |
Q |
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| T |
73813 |
taaataccttccgaaaaatggaaacagttttgcaacaaaaattaacaattaaccattaccttacctgttgaaccaatttactacctcatcaaatctaaca |
73912 |
T |
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| Q |
101 |
tgacccatctcaattaatttatgactaannnnnnnnccaccaagttgattgttggtgttttaacgtattttggagggtttaaaagaacatttacaatatt |
200 |
Q |
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| T |
73913 |
tgacccatctcaattaatttatcactaa-tttttttcca-caagtttattgttggtgttttaacgagttttggaaggtttgaaagaacatttacaatatt |
74010 |
T |
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| Q |
201 |
caaattataaaaccgaaataaatttaaagaacgcacgaaaagagagtaaagtggtaaaagaaataaccttaa-----nnnnnnnctcctaaactctacat |
295 |
Q |
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| T |
74011 |
caaattataaaaccgaaataaatttaaaggacgcacgagaagagaataaggtggt-aaagaaataaccttaattttttttttggatcctaaactctacat |
74109 |
T |
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| Q |
296 |
aacaactaaagtgggcttaaaaatcataaaactttaatagagcccaataattatcttatctct |
358 |
Q |
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| T |
74110 |
aacaactaaagtgggcttaaaaatcat-aaactttaatagagcccaataattatcttatctct |
74171 |
T |
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