View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9495_5 (Length: 333)
Name: NF9495_5
Description: NF9495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9495_5 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 6 - 330
Target Start/End: Complemental strand, 7130896 - 7130572
Alignment:
| Q |
6 |
ccaagaaaataagaaaagtaaaattaatcccaacaacgatatttaatatacttacaaaaatcacagctttgatgttgctagttgttattgggatttcaag |
105 |
Q |
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| T |
7130896 |
ccaaaaaaataagaaaagtaaaattaatcccaacaacgatatttaatatacttacaaaaatcacagctttgatgttgctagttgttattgggatttcaag |
7130797 |
T |
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| Q |
106 |
gcttccactttcttggattctcaaaagcacatcaacaagatcttcctgctctacctcatcactactaattttccctacttttgctcttctttgcttctct |
205 |
Q |
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| T |
7130796 |
gcttccactttcttggattctcaaaagcacatcaacaagatcttcttgctctacctcatcactactaactttcccttcttttgctcttctttgcttctct |
7130697 |
T |
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| Q |
206 |
tgatgctttctaacaattatttccaatattttatcagcttttttgtgcattttctccactttggattttgtgccagttagcacttgtattatagatttca |
305 |
Q |
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| T |
7130696 |
tgatgctttctaacaattatttccaatattttatcagcttttttgtgcattttcaacactttggattttgtgccagttagcatttgtattatagatttca |
7130597 |
T |
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| Q |
306 |
ttgaaggaaacaaatcagcaggttc |
330 |
Q |
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| T |
7130596 |
ttgaaggaaacaaatcagcaggttc |
7130572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 7141193 - 7141104
Alignment:
| Q |
63 |
aaatcacagctttgatgttgctagttgttattgggatttcaaggcttccactttcttggattctcaaaagcacatcaacaagatcttcct |
152 |
Q |
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| T |
7141193 |
aaatcacagctttgatgttgttgattgtcaattggacatcaaggctaccactttgttggactctcaaaagaacatccacaagatcttcct |
7141104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 7153024 - 7152937
Alignment:
| Q |
63 |
aaatcacagctttgatgttgctagttgttattgggatttcaaggcttccactttcttggattctcaaaagcacatcaacaagatcttc |
150 |
Q |
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|||||||||||||||||||| | ||||||||| ||| |||||| | |||||| ||||| || |||||| ||||| | ||||||||| |
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| T |
7153024 |
aaatcacagctttgatgttgttggttgttattttgatatcaaggttatcactttgttggactcgcaaaagaacatctagaagatcttc |
7152937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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