View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9495_6 (Length: 330)
Name: NF9495_6
Description: NF9495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9495_6 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 15945896 - 15945744
Alignment:
| Q |
12 |
tgagatagaaccaacaaaactattgtaatctgttagagcaactttctttacattggaaaactcggaactgacccctcctacaattgctaatcctagtgtt |
111 |
Q |
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| T |
15945896 |
tgagatagaaccaacaaagctattgtaatctgttagagcaactttctttacattggaaaactcggaactgacccctcctacaattgctaatcctagtgtt |
15945797 |
T |
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| Q |
112 |
gtatattccctttgtttttgttcatttgaagtagcagaattcttagagtctcc |
164 |
Q |
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| T |
15945796 |
gtatattccctttgtttttgttcatttgaagtagcagaattcttagagtctcc |
15945744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 183 - 330
Target Start/End: Complemental strand, 15945719 - 15945572
Alignment:
| Q |
183 |
cctattactgctactacgactcaaactatgatttcggttaagaactgcgcgttttccttcggaacggactacttcttcaacaacaaagtgaagcaatgta |
282 |
Q |
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| T |
15945719 |
cctattactgctactacgactcaaactatgatttcggttaagaaccgcgcgttttccttcggaacgaactacttcttcaacaacaaagtgaagcaatgta |
15945620 |
T |
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| Q |
283 |
gtttttccatcagtgctcttaacatcagaaagcttccttaaagaaacc |
330 |
Q |
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| T |
15945619 |
gtttttccatcagtgctcttaacatcagaaagcttccttaaagaaacc |
15945572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 26284066 - 26283991
Alignment:
| Q |
217 |
cggttaagaactgcgcgttttccttcggaacggactacttcttcaacaacaaagtgaagcaatgtagtttttccat |
292 |
Q |
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||||||||||| || ||||||||||| || |||||||||||||||| ||||||||||| ||||| |||||||||| |
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| T |
26284066 |
cggttaagaacggcacgttttccttcagattggactacttcttcaactacaaagtgaagtaatgtggtttttccat |
26283991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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