View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9495_low_1 (Length: 584)
Name: NF9495_low_1
Description: NF9495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9495_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 574
Target Start/End: Original strand, 7130572 - 7131118
Alignment:
| Q |
19 |
gaacctgctgatttgtttccttcaatgaaatctataatacaagtgctaactggcacaaaatccaaagtggagaaaatgcacaaaaaagctgataaaatat |
118 |
Q |
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| T |
7130572 |
gaacctgctgatttgtttccttcaatgaaatctataatacaaatgctaactggcacaaaatccaaagtgttgaaaatgcacaaaaaagctgataaaatat |
7130671 |
T |
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| Q |
119 |
tggaaataattgttagaaagcatcaagagaagcaaagaagagcaaaagtagggaaaattagtagtgatgaggtagagcaggaagatcttgttgatgtgct |
218 |
Q |
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| T |
7130672 |
tggaaataattgttagaaagcatcaagagaagcaaagaagagcaaaagaagggaaagttagtagtgatgaggtagagcaagaagatcttgttgatgtgct |
7130771 |
T |
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| Q |
219 |
tttgagaatccaagaaagtggaagccttgaaatcccaataacaactagcaacatcaaagctgtgatttttgtaagtatattaaatatcgttgttgggatt |
318 |
Q |
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| T |
7130772 |
tttgagaatccaagaaagtggaagccttgaaatcccaataacaactagcaacatcaaagctgtgatttttgtaagtatattaaatatcgttgttgggatt |
7130871 |
T |
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| Q |
319 |
aattttacttttcttannnnnnngggtgaccatgccattaattttactagctataggggtacatannnnnnnctttctatatttgtgtgaagttccttcn |
418 |
Q |
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| T |
7130872 |
aattttacttttcttatttttttgggtgaccatgccattaattttactagctataggggtacata---------ttttatatttgtgtgaagttccttca |
7130962 |
T |
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| Q |
419 |
nnnnnntgtgcgaagttatcaagttttcaatcattaatttttctactcaaagaatattttcaacgttgcgataatgatattttcatccactttaaaatag |
518 |
Q |
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| T |
7130963 |
aaaaaatgtgcgaagttatcaagttttcaatcattaatttttttactcaaagaatattttcaacgttgcgataatgatattttcatccactttaaaatag |
7131062 |
T |
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| Q |
519 |
tcaacctcacaagttgtaattacaaaaattatgctgaagattgtttcccccctatg |
574 |
Q |
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| T |
7131063 |
tcaacctcacaagttgtaattacaaaaattaggctgaagattgtttcccccctatg |
7131118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 7141104 - 7141193
Alignment:
| Q |
197 |
aggaagatcttgttgatgtgcttttgagaatccaagaaagtggaagccttgaaatcccaataacaactagcaacatcaaagctgtgattt |
286 |
Q |
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| T |
7141104 |
aggaagatcttgtggatgttcttttgagagtccaacaaagtggtagccttgatgtccaattgacaatcaacaacatcaaagctgtgattt |
7141193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 7152937 - 7153024
Alignment:
| Q |
199 |
gaagatcttgttgatgtgcttttgagaatccaagaaagtggaagccttgaaatcccaataacaactagcaacatcaaagctgtgattt |
286 |
Q |
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| T |
7152937 |
gaagatcttctagatgttcttttgcgagtccaacaaagtgataaccttgatatcaaaataacaaccaacaacatcaaagctgtgattt |
7153024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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