View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9495_low_4 (Length: 364)
Name: NF9495_low_4
Description: NF9495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9495_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 346
Target Start/End: Complemental strand, 1995141 - 1994802
Alignment:
| Q |
7 |
gataattctatttctcaatcttcaaccatacaatatatcaataataatatttttgataatgtttgtgtcatccccacaattctagagaacattctcaaga |
106 |
Q |
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| T |
1995141 |
gataattctatttctcaatcttcaaccatacaatatatcaataataatatttttgataatgtttgtgtcatccccacaattcaagagaacattctcaaga |
1995042 |
T |
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| Q |
107 |
gtagcaatagttccaactctctcatttctcaagaatataattgtcctactaattcacaacaaatagcaccttctcaatacattttgtcttttgaaaactc |
206 |
Q |
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| T |
1995041 |
gtagcaatagttccaactctctcatttctcaagaatataattgtcctactaattcacaacaaatagcaccttctcaatacattttgtcatttgaaaactc |
1994942 |
T |
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| Q |
207 |
aattgtgaaaccttcccctaatagtgccacattttcttctattatggtcccaaaaacaaccttgaacaacaatattgtgagtgaattaccaaagacaatt |
306 |
Q |
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| T |
1994941 |
aattatgaaaccttcccctaatagtgccacattttcttctattatggtcccaaaaacaaccttgaacaacaatattgtgagtgaattaccaaagacaatt |
1994842 |
T |
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| Q |
307 |
aagaaaagaaccaagaatcttagaagctcttcagagatac |
346 |
Q |
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| T |
1994841 |
aagaaaagaaccaagaatcttagaagctcttcagagatac |
1994802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 129 - 337
Target Start/End: Complemental strand, 1988061 - 1987844
Alignment:
| Q |
129 |
catttctcaagaatataattgtcctactaattcacaacaaatagcaccttctcaatacattttgtcttttgaaaactcaattgtgaaaccttcccctaat |
228 |
Q |
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| T |
1988061 |
cattgctcaagaatatacttgggctactaattcacaacaattaccaccttctcaatacattttatcttttgaaaactcaactatgcaaccttctcctaat |
1987962 |
T |
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| Q |
229 |
ag------tgccacattttcttctattatggtcc---caaaaacaaccttgaacaacaatattgtgagtgaattaccaaagacaattaagaaaagaacca |
319 |
Q |
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| T |
1987961 |
agtgacattgcaacatgttcttctatcatggttcaagaaacaacaacattgaataacaatgtgagtagtgaattaccaaagataattaagaaaagaacta |
1987862 |
T |
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| Q |
320 |
agaatcttagaagctctt |
337 |
Q |
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| T |
1987861 |
agaatcttagaagctctt |
1987844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 1988136 - 1988081
Alignment:
| Q |
18 |
ttctcaatcttcaaccatacaatatatcaataataatatttttgataatgtttgtgtca |
76 |
Q |
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| T |
1988136 |
ttctcaatcttcaaccatacaatatat---gaataatattgttgacaatgtttgtgtca |
1988081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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