View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9496_high_1 (Length: 866)
Name: NF9496_high_1
Description: NF9496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9496_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 346 - 847
Target Start/End: Complemental strand, 17595752 - 17595251
Alignment:
| Q |
346 |
gtaacaataatgtgtatatacaagtaaatgaataatacctttctatcccatccaatgtttagtataatcaatgacaagacacctttagtattcatgagca |
445 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
17595752 |
gtaacaataatgtatatatacaaagaaatgaataatacctttctatcccatccaatgtttagtacaatcaatgataagacaccttttgtattcatgagca |
17595653 |
T |
|
| Q |
446 |
ctccaagagccatactatctctaagagacattccatatatacttgtagcaactacagtgctcacaatcttggaagaaatcaacaagatcatgataacaca |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17595652 |
ctccaagagccatactatctctaagagacattccatatatacttgtagcaactacagtgctcacaatcttggaagaaatcaacaagatcatgataacaca |
17595553 |
T |
|
| Q |
546 |
aaccaacaacatattttgactaagagacaaataaagaaaataggtattacttctcaaacctatacttgcaaaaaacaatggtgccaaataacctgatgca |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17595552 |
aaccaacaacatattttgactaagagacaaataaagaaaataggtattacttctcaaacctatacttgcaaaaaacaatggtgccaaataacctgatgca |
17595453 |
T |
|
| Q |
646 |
atatcttctgtttgttcaatcaacatgtctgtaaactttccacgtggaagaattaacccaaaaatcaatgctccaacaactgaatgtgtaccaagaaatt |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17595452 |
atatcttctgtttgttcaatcaacatgtctgtaaactttccacgtggaagaattaacccaaaaatcaatgctccaacaacagaatgtgtaccaagaaatt |
17595353 |
T |
|
| Q |
746 |
cagtaacagttgcacatgcaataacaccaactaatacataggttaattggtatgcatcccatttatcttcatctgnnnnnnnnactattattttgttgag |
845 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17595352 |
cagtaacagttgcacatgcaataacaccaactaatacataggttaattggtatgcatcccatttatcttcatctgttttttttactattattttgttgag |
17595253 |
T |
|
| Q |
846 |
tg |
847 |
Q |
| |
|
|| |
|
|
| T |
17595252 |
tg |
17595251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 17596051 - 17595740
Alignment:
| Q |
20 |
ctggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtatagttcctattttctattttctacnnnnnnn-ggtttata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
17596051 |
ctggaaataagttgggaatgcctaatttcagatttaacaccttttaaaaaggttttggtatagtttctattttctattttctactcttttttggtttata |
17595952 |
T |
|
| Q |
119 |
ttgaattgatgctctttgaatctatttnnnnnnn-gaaagtacgtagatttctagggtataaattaaattaagtgacgacaaaaataattttctttaaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| || ||||| |||||| ||||||||||| ||||||| |
|
|
| T |
17595951 |
ttgaattgatgctctttgaatctatttaaaaaaaagaaagtacgtagatttctagggcataaatcaagttaagggacgacgaaaataattttgtttaaaa |
17595852 |
T |
|
| Q |
218 |
taaaatcccttgttattgattttttgttttgctaatgaatgcattgtaannnnnnnnaaaagcacatgaagctcaaagggtaacaaaaggttttatcaag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17595851 |
taaaatcccttgttattgattttttgttttgctaatgaatgcattgtaatttttttaaaaagcacatgaagctcaaagggtaacaaaaggttttatcaag |
17595752 |
T |
|
| Q |
318 |
taacaataatgt |
329 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17595751 |
taacaataatgt |
17595740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 34427090 - 34427032
Alignment:
| Q |
25 |
aataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtatagt |
83 |
Q |
| |
|
|||| ||||||||| || ||||| | |||||||||||||||||||||||||||| |||| |
|
|
| T |
34427090 |
aataggttgggaatacccaatttcaaatttaacaccttttaaaaaagttttggtttagt |
34427032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 41517826 - 41517773
Alignment:
| Q |
30 |
gttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtatagt |
83 |
Q |
| |
|
|||||||||||||||||| |||||| || ||||| |||| ||||||||||||| |
|
|
| T |
41517826 |
gttgggaatgcctaatttcagattttgcaacttttgaaaaggttttggtatagt |
41517773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 19280646 - 19280593
Alignment:
| Q |
25 |
aataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt |
78 |
Q |
| |
|
|||| |||||| ||||| ||||| || |||||||||||||||||| |||||||| |
|
|
| T |
19280646 |
aatatgttgggtatgcccaatttcaggtttaacaccttttaaaaaggttttggt |
19280593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 45992435 - 45992488
Alignment:
| Q |
25 |
aataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt |
78 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||| || |||| |||||||| |
|
|
| T |
45992435 |
aataagttgggtatgcccaatttcagatttaacacctattgaaaaggttttggt |
45992488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University