View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9496_high_3 (Length: 450)
Name: NF9496_high_3
Description: NF9496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9496_high_3 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 22471723 - 22472000
Alignment:
| Q |
16 |
agatatattacaatgcgagggcatgttcacttcaaagatttacaaaatatataaaatataaatttattaaaacgtccataatcttttgtaacaaccatgt |
115 |
Q |
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| T |
22471723 |
agatatattacaatgcgagggcatgttcacttcaaagatatacaaaatatataaaatataaatttattaaaacgtccataatcttttgtaacaaccatgt |
22471822 |
T |
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| Q |
116 |
cgttaattagcttagtattaactacaacaattatttgcagctagaattaataacaaaatgtagcatttaatttttgaacgttaacaaggct--aaatttt |
213 |
Q |
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| T |
22471823 |
c-ttaattagcttagtattaactacaacaattatttgcagctagaattaataacaaaatgtagcatttaatttttgaacagtaacaaggctaaaaaaatt |
22471921 |
T |
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| Q |
214 |
ttccgataaaaaacatttattaatagcggtcgaacccaatcatttgcttaaaagtttggacataagagaaaggtaccaa |
292 |
Q |
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| T |
22471922 |
tccaaaaaaaaaacatttattaatagcggtcgaacccaatcatttgcttaaaagtttggacataagagaaaggtaccaa |
22472000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 35204695 - 35204736
Alignment:
| Q |
117 |
gttaattagcttagtattaactacaacaattatttgcagcta |
158 |
Q |
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| T |
35204695 |
gttaattagcttaggattaactactacaattatttgcggcta |
35204736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 27861 - 27774
Alignment:
| Q |
117 |
gttaattagcttagtattaactacaacaattatttgcagctagaattaataacaaaatgtagcatttaatttttgaacgttaacaagg |
204 |
Q |
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| T |
27861 |
gttaattagcttagtattaactacaacaattttttttagctagaattaataacaaaatgtaacatttaattttaaaatgttaacaagg |
27774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 27956 - 27901
Alignment:
| Q |
41 |
ttcacttcaaagatttacaaaatatataaaatataaatttattaaaacgtccataatc |
98 |
Q |
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| T |
27956 |
ttcacttcaaagatatacaaaatatagaa--tataaatttataaaaacgttcataatc |
27901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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