View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9496_low_11 (Length: 412)

Name: NF9496_low_11
Description: NF9496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9496_low_11
NF9496_low_11
[»] chr2 (27 HSPs)
chr2 (126-395)||(36796118-36796399)
chr2 (172-357)||(36759831-36760015)
chr2 (14-122)||(4975696-4975804)
chr2 (16-98)||(4976447-4976529)
chr2 (16-98)||(4994354-4994436)
chr2 (14-122)||(4993604-4993712)
chr2 (16-122)||(37545676-37545782)
chr2 (26-122)||(36718974-36719070)
chr2 (16-108)||(41519867-41519959)
chr2 (16-108)||(42370892-42370984)
chr2 (54-106)||(1271247-1271299)
chr2 (16-68)||(8536828-8536880)
chr2 (16-64)||(42369701-42369749)
chr2 (16-122)||(37546506-37546612)
chr2 (56-122)||(41984727-41984793)
chr2 (19-68)||(8536191-8536240)
chr2 (76-128)||(21471956-21472008)
chr2 (76-122)||(14573261-14573307)
chr2 (76-122)||(21471017-21471063)
chr2 (76-122)||(30545437-30545483)
chr2 (30-123)||(4479658-4479751)
chr2 (51-108)||(34617667-34617724)
chr2 (172-209)||(36775214-36775251)
chr2 (22-122)||(41042542-41042643)
chr2 (22-122)||(45139692-45139793)
chr2 (56-108)||(36390971-36391023)
chr2 (86-122)||(44154276-44154312)
[»] chr1 (24 HSPs)
chr1 (14-122)||(14925282-14925390)
chr1 (14-122)||(11469081-11469189)
chr1 (14-123)||(11469705-11469814)
chr1 (14-115)||(14924681-14924782)
chr1 (14-123)||(31787477-31787586)
chr1 (14-98)||(31788216-31788300)
chr1 (16-123)||(7463414-7463521)
chr1 (22-108)||(2687675-2687761)
chr1 (16-122)||(7464012-7464118)
chr1 (16-93)||(11426882-11426959)
chr1 (18-92)||(38618260-38618334)
chr1 (21-122)||(42384101-42384202)
chr1 (56-108)||(49420098-49420150)
chr1 (16-83)||(11427449-11427516)
chr1 (76-123)||(16270206-16270253)
chr1 (76-123)||(23440867-23440914)
chr1 (16-122)||(11032161-11032267)
chr1 (18-108)||(36387992-36388082)
chr1 (27-93)||(37889908-37889974)
chr1 (76-122)||(51974437-51974483)
chr1 (76-122)||(51987827-51987873)
chr1 (50-123)||(11031430-11031503)
chr1 (30-122)||(29334214-29334306)
chr1 (18-117)||(49611503-49611603)
[»] chr8 (17 HSPs)
chr8 (14-122)||(12350594-12350702)
chr8 (14-122)||(12349967-12350075)
chr8 (16-122)||(43924490-43924596)
chr8 (14-122)||(43924958-43925066)
chr8 (14-98)||(43971302-43971386)
chr8 (14-98)||(43972026-43972110)
chr8 (19-98)||(39257658-39257737)
chr8 (16-68)||(38686357-38686409)
chr8 (19-92)||(38687000-38687073)
chr8 (16-68)||(33801553-33801605)
chr8 (16-73)||(15183790-15183847)
chr8 (19-92)||(33802318-33802391)
chr8 (16-73)||(39258391-39258448)
chr8 (76-122)||(61454-61500)
chr8 (76-122)||(1365829-1365875)
chr8 (76-122)||(34992266-34992312)
chr8 (76-122)||(41859310-41859356)
[»] chr4 (34 HSPs)
chr4 (14-122)||(6247410-6247519)
chr4 (19-122)||(6246784-6246887)
chr4 (14-115)||(10421521-10421622)
chr4 (14-115)||(15481510-15481611)
chr4 (16-115)||(15481042-15481141)
chr4 (14-76)||(10420963-10421025)
chr4 (19-122)||(30808621-30808724)
chr4 (16-123)||(45331395-45331502)
chr4 (16-68)||(50709713-50709765)
chr4 (16-92)||(50710359-50710435)
chr4 (16-122)||(30809447-30809553)
chr4 (19-92)||(53664242-53664315)
chr4 (16-68)||(53665028-53665080)
chr4 (26-68)||(13856645-13856687)
chr4 (51-121)||(25370507-25370577)
chr4 (22-121)||(3847887-3847987)
chr4 (53-108)||(232028-232083)
chr4 (18-93)||(34956313-34956388)
chr4 (16-123)||(45330564-45330671)
chr4 (76-122)||(11417687-11417733)
chr4 (76-122)||(11417939-11417985)
chr4 (76-122)||(26611285-26611331)
chr4 (76-122)||(29651334-29651380)
chr4 (76-122)||(36865719-36865765)
chr4 (76-122)||(47376852-47376898)
chr4 (76-122)||(47377600-47377646)
chr4 (18-92)||(50709022-50709096)
chr4 (43-115)||(11680283-11680356)
chr4 (43-115)||(11688562-11688635)
chr4 (20-108)||(34371476-34371564)
chr4 (30-122)||(45235916-45236008)
chr4 (76-108)||(47326791-47326823)
chr4 (76-108)||(47341587-47341619)
chr4 (76-108)||(55514356-55514388)
[»] chr3 (10 HSPs)
chr3 (14-122)||(38337417-38337525)
chr3 (16-122)||(38336944-38337048)
chr3 (18-122)||(44022031-44022135)
chr3 (16-122)||(49287687-49287793)
chr3 (76-123)||(19132814-19132861)
chr3 (29-88)||(15450259-15450318)
chr3 (75-122)||(17226968-17227015)
chr3 (76-123)||(19132562-19132609)
chr3 (76-122)||(36750439-36750485)
chr3 (85-122)||(42108370-42108407)
[»] scaffold0189 (2 HSPs)
scaffold0189 (16-122)||(12801-12907)
scaffold0189 (14-122)||(12184-12292)
[»] chr5 (13 HSPs)
chr5 (15-108)||(4554671-4554764)
chr5 (16-123)||(4555331-4555438)
chr5 (30-122)||(8040400-8040492)
chr5 (50-108)||(26712364-26712422)
chr5 (50-108)||(26982102-26982160)
chr5 (29-122)||(17767546-17767639)
chr5 (76-123)||(2319265-2319312)
chr5 (76-122)||(8204120-8204166)
chr5 (76-122)||(9142047-9142093)
chr5 (76-122)||(15184019-15184065)
chr5 (76-122)||(33002818-33002864)
chr5 (76-122)||(39950404-39950450)
chr5 (22-118)||(39167388-39167484)
[»] chr6 (10 HSPs)
chr6 (14-122)||(27763413-27763521)
chr6 (76-122)||(24125972-24126018)
chr6 (76-124)||(3543065-3543113)
chr6 (76-122)||(7193338-7193384)
chr6 (76-122)||(24126720-24126766)
chr6 (76-122)||(33480630-33480676)
chr6 (76-117)||(3542819-3542860)
chr6 (76-117)||(22582481-22582522)
chr6 (76-117)||(22587312-22587353)
chr6 (76-117)||(33479701-33479742)
[»] chr7 (17 HSPs)
chr7 (16-122)||(27599211-27599317)
chr7 (16-97)||(46757449-46757530)
chr7 (14-123)||(46759202-46759311)
chr7 (16-123)||(27600037-27600144)
chr7 (76-125)||(38779565-38779614)
chr7 (76-123)||(668178-668225)
chr7 (60-123)||(45887278-45887341)
chr7 (19-93)||(12732276-12732350)
chr7 (76-122)||(17145622-17145668)
chr7 (76-122)||(37468910-37468956)
chr7 (76-122)||(37469007-37469053)
chr7 (76-122)||(38778854-38778900)
chr7 (76-122)||(41194513-41194559)
chr7 (76-122)||(45887982-45888028)
chr7 (76-117)||(7677811-7677852)
chr7 (60-121)||(48259804-48259865)
chr7 (68-108)||(35771253-35771293)
[»] scaffold0119 (2 HSPs)
scaffold0119 (54-106)||(29938-29990)
scaffold0119 (54-98)||(36620-36664)
[»] scaffold0071 (1 HSPs)
scaffold0071 (29-88)||(11873-11932)
[»] scaffold0311 (1 HSPs)
scaffold0311 (76-122)||(162-208)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 126 - 395
Target Start/End: Complemental strand, 36796399 - 36796118
Alignment:
Q  126 tttctattgctttcagaccccaatatggtaacaatgtcttgctt------------atatattttctttgctttgaatcttgttgttagctgcataaatg 213  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||            ||||||||||||||||||||||||||||||||||||||||||||    
T  36796399 tttctattgctttcaaaccccaatatggtaacaatgtctagcttgtgcatcaccatatatattttctttgctttgaatcttgttgttagctgcataaatg 36796300  T
Q  214 taagtaacactacttaggaaaatgaaaattgaaaggatgaatctatctatctattgtgttttattttgtcacatgttatcaccttctttatttaatcaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36796299 taagtaacactacttaggaaaatgaaaattgaaaggatgaatctatctatctattgtgttttattttgtcacatgttatcaccttctttatttaatcaaa 36796200  T
Q  314 acatagtaccttttttagacatattacaacagggaatagtgctacctgttttattaggatttcgagttattccaaaggatgt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36796199 acatagtaccttttttagacatattacaacagggaatagtgctacctgttttattaggatttcgagttattccaaaggatgt 36796118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 172 - 357
Target Start/End: Complemental strand, 36760015 - 36759831
Alignment:
Q  172 atattttctttgctttgaatcttgttgttagctgcataaatgtaagtaacactacttaggaaaatgaaaatt-gaaaggatgaatctatctatctattgt 270  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||  |||     
T  36760015 atattttctttgctttgaatcttgttgttagctgca-aaatgtaagtaacactaattaggaaaatgaaaattagaaaggatgaatctatctatc--ttgc 36759919  T
Q  271 gttttattttgtcacatgttatcacc-ttctttatttaatcaaaacatagtaccttttttagacatattacaacagggaatagtgcta 357  Q
    ||||| || |||||  |||||||||| ||||||||||||| |  ||||||||| |||||||||||| |||||||| ||| ||||||||    
T  36759918 gttttgttctgtcatgtgttatcacctttctttatttaattatcacatagtactttttttagacatgttacaacatggattagtgcta 36759831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 4975804 - 4975696
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    |||| |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||| |||| |||||||||||||| || |||||| | ||    
T  4975804 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatacta 4975705  T
Q  114 aatgccacc 122  Q
    || ||||||    
T  4975704 aacgccacc 4975696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 4976447 - 4976529
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactt 98  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||  |||||||||||||||||||||||    
T  4976447 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaactt 4976529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 4994354 - 4994436
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactt 98  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||  |||||||||||||||||||||||    
T  4994354 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaactt 4994436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 4993712 - 4993604
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    |||| |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||| |||| |||| ||||||||| || |||||| | ||    
T  4993712 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtggaaaacaacttcccattcccatacta 4993613  T
Q  114 aatgccacc 122  Q
    || ||||||    
T  4993612 aacgccacc 4993604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 37545782 - 37545676
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||||||||||||||| | | |||||  ||||| |||||||||||||| |||  |||||||| |||||||||||||| ||||||| |  |||||    
T  37545782 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaacttccctttcctattttaaa 37545683  T
Q  116 tgccacc 122  Q
    |||||||    
T  37545682 tgccacc 37545676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 36718974 - 36719070
Alignment:
Q  26 tgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    ||||||||||||||||||||| | || || || ||||||| |||||||| ||||| || || |||||||| |||||||||||| | |||||||||||    
T  36718974 tgtctatgataaaagtatgtttcttatttaatttaatggttaaaattagctttcctatggtaggaaacaagtttcctttcccatactaaatgccacc 36719070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 41519867 - 41519959
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    |||||||| ||||||||| ||||||||||||| ||||||||| ||| ||||||||  |  |||||||| |||||||| ||||| |||||||||    
T  41519867 tggtgttgggtgtctatggtaaaagtatgttctctactttatttaacggtcaaaaaaaactttcccatggtgggaaaaaacttccctttccca 41519959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 42370892 - 42370984
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    |||||| ||||||||||||||||| ||| ||| | |||||||||||||| ||| |||   |||||||| ||||||||||||||||| ||||||    
T  42370892 tggtgtcgagtgtctatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaacaactttccattccca 42370984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 1271299 - 1271247
Alignment:
Q  54 ttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcc 106  Q
    |||||||| ||| |||||||||||||||||||||| |||||||||||||||||    
T  1271299 ttatctaacggttaaaattagttttcccatagtggaaaacaactttcctttcc 1271247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 8536828 - 8536880
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaa 68  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||||    
T  8536828 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaa 8536880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 42369749 - 42369701
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatgg 64  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  42369749 tggtgttgagtgtctatgataaaattatgttctctactttatctaatgg 42369701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 37546506 - 37546612
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||| ||||| ||||| | | |||||  ||||| ||||| |||||||| |||  ||||||||  ||||||||||||  |||||||||  |||||    
T  37546506 tggtgttgagagtctacgataagaatgtgttcgttacttaatctagtggtcaaatttaactttcccatgatgggaaacaactcccctttcccattttaaa 37546605  T
Q  116 tgccacc 122  Q
    |||||||    
T  37546606 tgccacc 37546612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 41984793 - 41984727
Alignment:
Q  56 atctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||||||| || ||| |||||||| ||| |||| ||||  |||||||||||||||||||||||    
T  41984793 atctaatggtcagaaatagctttcccatggtgagaaaaaactagcctttcccaaattaaatgccacc 41984727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 8536240 - 8536191
Alignment:
Q  19 tgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaa 68  Q
    |||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  8536240 tgttgagtgtctatgataaaatcatgttctctactttatctaatcgtcaa 8536191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 21471956 - 21472008
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccaccccattt 128  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||| ||||    
T  21471956 tttcccatggtgggaaagaactctcctttcccaaattaaatggcaccctattt 21472008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 14573307 - 14573261
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  14573307 tttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 14573261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 21471063 - 21471017
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  21471063 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21471017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 30545437 - 30545483
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    ||||||||  ||||||||||||| |||||||||||||||||| ||||    
T  30545437 tttcccatcatgggaaacaacttccctttcccaaattaaatggcacc 30545483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 4479658 - 4479751
Alignment:
Q  30 tatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgccaccc 123  Q
    |||||||| | ||||||||  | || ||||||||| ||  ||||  |||||||| ||| |||| |||| ||||||||||||||||||| |||||    
T  4479658 tatgataagaatatgttcctcatttaatctaatggacatgattaactttcccatggtgagaaagaactctcctttcccaaattaaatggcaccc 4479751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 34617724 - 34617667
Alignment:
Q  51 actttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    |||| ||||||||||||||| ||  |||||||| ||||||||||| | ||||||||||    
T  34617724 acttaatctaatggtcaaaaataactttcccatggtgggaaacaattatcctttccca 34617667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 36775251 - 36775214
Alignment:
Q  172 atattttctttgctttgaatcttgttgttagctgcata 209  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  36775251 atattttctttgctttgaacctttttgttagctgcata 36775214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 41042643 - 41042542
Alignment:
Q  22 tgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattag-ttttcccatagtgggaaacaactttcctttcccaaattaaatgcca 120  Q
    |||||||||||||||| | |||| ||  || || |||||||||||||||  |  ||||||||| |||||||| ||   ||||||| ||||||||||||||    
T  41042643 tgagtgtctatgataacattatggtctatatttgatctaatggtcaaaaaaatattttcccatggtgggaaagaagcctcctttctcaaattaaatgcca 41042544  T
Q  121 cc 122  Q
    ||    
T  41042543 cc 41042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 45139793 - 45139692
Alignment:
Q  22 tgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattag-ttttcccatagtgggaaacaactttcctttcccaaattaaatgcca 120  Q
    |||||||||||||||| | |||| ||  || || |||||||||||||||  |  |||||||||  ||| ||| || | ||||||||||||||||||||||    
T  45139793 tgagtgtctatgataacattatggtctatatttgatctaatggtcaaaaaaatattttcccatgatggaaaagaagtctcctttcccaaattaaatgcca 45139694  T
Q  121 cc 122  Q
    ||    
T  45139693 cc 45139692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 36391023 - 36390971
Alignment:
Q  56 atctaatggtcaaaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    |||||||||| ||||||   |||||||| |||||||||||||| |||||||||    
T  36391023 atctaatggttaaaatttactttcccatggtgggaaacaacttccctttccca 36390971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 44154312 - 44154276
Alignment:
Q  86 tgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  44154312 tgggaaacaacttccctttcccaaattaaatggcacc 44154276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 14925282 - 14925390
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  14925282 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagctttcccatggtgggaaacaactttccttccccaaatta 14925381  T
Q  114 aatgccacc 122  Q
    || ||||||    
T  14925382 aacgccacc 14925390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 11469189 - 11469081
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||    
T  11469189 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattagctttcccatggtgggaaacaacttccctttcctaaatta 11469090  T
Q  114 aatgccacc 122  Q
    || ||||||    
T  11469089 aacgccacc 11469081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 11469705 - 11469814
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||  ||||||||| ||||||||||||||    
T  11469705 tctggtgttgaatgtctatgataaaagtatgttctctactttatctaatggtcaaaattagtttttccatggtgaaaaacaacttccctttcccaaatta 11469804  T
Q  114 aatgccaccc 123  Q
    |||| |||||    
T  11469805 aatgtcaccc 11469814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 14924782 - 14924681
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    |||||||||||||||||||||||||| ||||||| ||| || || ||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  14924782 tctggtgttgagtgtctatgataaaaatatgttctctatttaatttaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaatta 14924683  T
Q  114 aa 115  Q
    ||    
T  14924682 aa 14924681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 31787586 - 31787477
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| |||||||||||||| || |||||| | ||    
T  31787586 tctgatgttgagtctctatgataaaagtatgttctctactttatctaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatacta 31787487  T
Q  114 aatgccaccc 123  Q
    || |||||||    
T  31787486 aacgccaccc 31787477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 31788216 - 31788300
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactt 98  Q
    |||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||  |||||||| ||||||||||||||    
T  31788216 tctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaactt 31788300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 7463521 - 7463414
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||  ||||||||||||| | |||||  || || ||||||||||||||||||| |||||||| |||||||||   |||||||| |||   ||||    
T  7463521 tggtgttgatggtctatgataaaactgtgttctttatttaatctaatggtcaaaattagctttcccatggtgggaaactcttttccttttccatgctaaa 7463422  T
Q  116 tgccaccc 123  Q
    ||||||||    
T  7463421 tgccaccc 7463414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 2687675 - 2687761
Alignment:
Q  22 tgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    |||| ||||||||||||| |||||||| || || ||||||  ||||||| || ||||||||| ||||||||||| | ||||||||||    
T  2687675 tgagagtctatgataaaactatgttccttagttaatctaactgtcaaaaataattttcccatggtgggaaacaattatcctttccca 2687761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 7464012 - 7464118
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||  ||||||||||||  | ||||| ||| || |||| ||||||||||||||||||||||| |||||||||   || ||||| |||  |||||    
T  7464012 tggtgttgatggtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggtgggaaactctttcccttttccatgttaaa 7464111  T
Q  116 tgccacc 122  Q
    |||||||    
T  7464112 tgccacc 7464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 11426959 - 11426882
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaac 93  Q
    |||||||||  ||||||||||||| | |||||  || || ||||||||||||||||||| |||||||| |||||||||    
T  11426959 tggtgttgatggtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaac 11426882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 38618334 - 38618260
Alignment:
Q  18 gtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaa 92  Q
    |||||||| ||||||||||| | | ||||| |||||| |||||||||||||| |||  |||||||| ||||||||    
T  38618334 gtgttgagagtctatgataagaatgtgttcactacttaatctaatggtcaaacttaactttcccatggtgggaaa 38618260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 42384101 - 42384202
Alignment:
Q  21 ttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgcca 120  Q
    |||||||||||||||||||| ||||||| || |  |||||||||||| ||  |  ||||||||  | |||||||| | |||||||||| | |||||||||    
T  42384101 ttgagtgtctatgataaaagcatgttccttattaaatctaatggtcagaaaaaactttcccatgataggaaacaagtatcctttcccatactaaatgcca 42384200  T
Q  121 cc 122  Q
    ||    
T  42384201 cc 42384202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 49420150 - 49420098
Alignment:
Q  56 atctaatggtcaaaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    |||||||||||||||  || ||||||||  |||||||||||||||||||||||    
T  49420150 atctaatggtcaaaaaaagctttcccatcatgggaaacaactttcctttccca 49420098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 11427449 - 11427516
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccat 83  Q
    |||||||||  ||||||||||||  | ||||| ||| || |||| |||||||||||||||||||||||    
T  11427449 tggtgttgatggtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccat 11427516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 16270253 - 16270206
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccaccc 123  Q
    |||||||| |||||||| |||| ||||||||||||||||||| |||||    
T  16270253 tttcccatggtgggaaagaactctcctttcccaaattaaatggcaccc 16270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 23440867 - 23440914
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccaccc 123  Q
    |||||||| |||||||| |||| ||||||||||||||||||| |||||    
T  23440867 tttcccatggtgggaaagaactctcctttcccaaattaaatggcaccc 23440914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 11032161 - 11032267
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||| ||| ||||||| | | |||||  ||||| |||||||||||||| | |  |||||||| ||||||||| | |  |||||||||  |||||    
T  11032161 tggtgttgagagtccatgataagaatgtgttcattacttaatctaatggtcaaattcaactttcccatggtgggaaactattcccctttcccatgttaaa 11032260  T
Q  116 tgccacc 122  Q
    |||||||    
T  11032261 tgccacc 11032267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 36387992 - 36388082
Alignment:
Q  18 gtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    ||||||||||||||||||||||| ||||||| || |  |||||||||||| ||  |   |||||||| |||||||||| | || |||||||    
T  36387992 gtgttgagtgtctatgataaaagcatgttccatattaaatctaatggtcagaaaaaaaattcccataatgggaaacaaatatcatttccca 36388082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 37889974 - 37889908
Alignment:
Q  27 gtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaac 93  Q
    ||||||||||||| | |||||  || || ||||||||||||||||| | |||||||| |||||||||    
T  37889974 gtctatgataaaactgtgttctttagttaatctaatggtcaaaattcgctttcccatggtgggaaac 37889908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 51974483 - 51974437
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  51974483 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 51974437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 51987873 - 51987827
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| || | ||||||||||||||||||||||||    
T  51987873 tttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 51987827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 11031503 - 11031430
Alignment:
Q  50 tactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgccaccc 123  Q
    ||||| |||||||||||||| |||  |||||||| ||||||||| | |  |||||||||  |||||||||||||    
T  11031503 tacttaatctaatggtcaaatttaactttcccatggtgggaaactattcccctttcccatgttaaatgccaccc 11031430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 29334306 - 29334214
Alignment:
Q  30 tatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    ||||||||||||||| ||  || || |||||||||  ||||||   |||||||| ||||||||||||| ||| ||||||   |||||||||||    
T  29334306 tatgataaaagtatggtctttatttgatctaatgggtaaaatttactttcccatggtgggaaacaactatccattcccatgctaaatgccacc 29334214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 49611503 - 49611603
Alignment:
Q  18 gtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaat-tagttttcccatagtgggaaacaactttcctttcccaaattaaat 116  Q
    |||||||| | | ||| ||||| | ||||||||| || ||||||||| |||||  || |||||||||  ||||||| ||||  |||||||||||||||||    
T  49611503 gtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaattttcccatgatgggaaaaaactagcctttcccaaattaaat 49611602  T
Q  117 g 117  Q
    |    
T  49611603 g 49611603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 12350594 - 12350702
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||    
T  12350594 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaggtttcccatggtgggaaacaatttccctttcccaaatta 12350693  T
Q  114 aatgccacc 122  Q
    || ||||||    
T  12350694 aacgccacc 12350702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 12350075 - 12349967
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||    
T  12350075 tctggtgttgagtgtctatgataaaagcatgttctttactttatctaatggttaaaattagtttttccatggtgggaaacaacttccctttcccaaatta 12349976  T
Q  114 aatgccacc 122  Q
    || ||||||    
T  12349975 aacgccacc 12349967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 43924596 - 43924490
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    ||||||||||||| |||||||||| ||||||| ||| || |||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  43924596 tggtgttgagtgtttatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaa 43924497  T
Q  116 tgccacc 122  Q
    |||||||    
T  43924496 tgccacc 43924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 43924958 - 43925066
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    |||||||||||||||||||||||||| ||||||| ||| || |||||| |||||||||||  |||| ||| |||||||||||||| ||||||||||||||    
T  43924958 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaaacaacttccctttcccaaatta 43925057  T
Q  114 aatgccacc 122  Q
    || ||||||    
T  43925058 aacgccacc 43925066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 43971386 - 43971302
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactt 98  Q
    |||| |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||    
T  43971386 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaactt 43971302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 43972026 - 43972110
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactt 98  Q
    |||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||  |||||||||||||||||||||||    
T  43972026 tctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaactt 43972110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 39257737 - 39257658
Alignment:
Q  19 tgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactt 98  Q
    |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||    
T  39257737 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaactt 39257658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 38686409 - 38686357
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaa 68  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||||    
T  38686409 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaa 38686357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 38687000 - 38687073
Alignment:
Q  19 tgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaa 92  Q
    |||||||||||||||||||||  |||||| ||||||||||||||| |||| |||   |||||||| ||||||||    
T  38687000 tgttgagtgtctatgataaaatcatgttctctactttatctaatgatcaatatttactttcccattgtgggaaa 38687073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 33801605 - 33801553
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaa 68  Q
    ||||||||||||||||||||||||  |||||| ||||||||| ||||||||||    
T  33801605 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaa 33801553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 15183790 - 15183847
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaatta 73  Q
    |||| |||||||||| ||||||||  |||||  |||||||||||||||||||||||||    
T  15183790 tggttttgagtgtctgtgataaaatcatgttttctactttatctaatggtcaaaatta 15183847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 33802318 - 33802391
Alignment:
Q  19 tgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaa 92  Q
    |||||||||||||||||||||  |||||| ||| ||||| |||||||||| |||   |||||||| ||||||||    
T  33802318 tgttgagtgtctatgataaaaccatgttctctattttatttaatggtcaatatttactttcccatggtgggaaa 33802391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 39258391 - 39258448
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaatta 73  Q
    |||||||||||||||| | |||||||||||||  || ||||||||||||| |||||||    
T  39258391 tggtgttgagtgtctacggtaaaagtatgttctttagtttatctaatggttaaaatta 39258448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 61500 - 61454
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| || | ||||||||||||||||||||||||    
T  61500 tttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 61454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 1365875 - 1365829
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| || | ||||||||||||||||||||||||    
T  1365875 tttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 34992266 - 34992312
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  34992266 tttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 34992312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 41859356 - 41859310
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  41859356 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 41859310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 6247410 - 6247519
Alignment:
Q  14 tctggtgttgagtgtctatgataaaa-gtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatt 112  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||  || |||||||||| |||||||||||||    
T  6247410 tctggtgttgagtgtctatgataaaaagtatgttctctactttatctaatgatcaaaattagttttcccatgatgagaaacaacttccctttcccaaatt 6247509  T
Q  113 aaatgccacc 122  Q
    ||| ||||||    
T  6247510 aaacgccacc 6247519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 6246887 - 6246784
Alignment:
Q  19 tgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgc 118  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||  |||||||| ||||||||||| || |||||||||||||||| ||    
T  6246887 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaactttcccatggtgggaaacaatttccctttcccaaattaaacgc 6246788  T
Q  119 cacc 122  Q
    ||||    
T  6246787 cacc 6246784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 10421521 - 10421622
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    |||||||||||||||||||||||||| ||||||| ||| || |||||| |||||||||||| |||||||| |||| ||||||||| ||||||||||||||    
T  10421521 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtggaaaacaacttccctttcccaaatta 10421620  T
Q  114 aa 115  Q
    ||    
T  10421621 aa 10421622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 15481510 - 15481611
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    ||||||||||||| |||||||||||| ||||||| ||| || |||||  ||||||||||||||||||||| |||||||||||||| |||||| |||||||    
T  15481510 tctggtgttgagtttctatgataaaaatatgttctctatttaatctaccggtcaaaattagttttcccattgtgggaaacaacttccctttcgcaaatta 15481609  T
Q  114 aa 115  Q
    ||    
T  15481610 aa 15481611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 15481141 - 15481042
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||| ||||||||||||| ||||||| ||| || |||||| |||||||||||| ||||||||   |||||||||||| |||| |||||||||||    
T  15481141 tggtgttgagagtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgacgggaaacaacttcccttccccaaattaaa 15481042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 10421025 - 10420963
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagtt 76  Q
    |||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  10421025 tctggtgttgagtgtctatgataaaagtatgttatctagtttatctaatggtcaaaattagtt 10420963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 30808724 - 30808621
Alignment:
Q  19 tgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgc 118  Q
    ||||||||||||||||||| | | | |||  ||||| |||||||||||||| |||  |||||||| ||||||||||||| ||||||||||  ||||||||    
T  30808724 tgttgagtgtctatgataagaatgtattcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactctcctttcccattttaaatgc 30808625  T
Q  119 cacc 122  Q
    ||||    
T  30808624 cacc 30808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 45331395 - 45331502
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||||||||||||||| | | |||||  ||||| |||||||||||||| |||  |||| ||| |||||||||||||  |||||| ||  |||||    
T  45331395 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttctcatggtgggaaacaactcccctttctcattttaaa 45331494  T
Q  116 tgccaccc 123  Q
    ||||||||    
T  45331495 tgccaccc 45331502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 50709765 - 50709713
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaa 68  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  50709765 tggtgttgagtgtctatgataaaactatgttctctactttatctaatagtcaa 50709713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 50710359 - 50710435
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaa 92  Q
    |||||||||||||||||||||||   |||||| |||||||||||||||||||| |||   |||||||| ||||||||    
T  50710359 tggtgttgagtgtctatgataaattcatgttctctactttatctaatggtcaatatttactttcccatggtgggaaa 50710435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 30809447 - 30809553
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||| ||||||||||||| | |||||  ||||| ||||| |||||||| |||  |||| ||| |||| ||||||||  |||||||||  |||||    
T  30809447 tggtgttgagagtctatgataaaaatgtgttcattacttaatctagtggtcaaatttaactttctcatggtggaaaacaactcccctttcccattttaaa 30809546  T
Q  116 tgccacc 122  Q
    |||||||    
T  30809547 tgccacc 30809553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 53664315 - 53664242
Alignment:
Q  19 tgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaa 92  Q
    |||||||||||||||||||||  |||||| ||| |||||||||||||||| |||   |||||||| ||||||||    
T  53664315 tgttgagtgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatggtgggaaa 53664242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 53665028 - 53665080
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaa 68  Q
    ||||||||||||||||||||||||  |||||| ||||||||| ||||||||||    
T  53665028 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaa 53665080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 13856687 - 13856645
Alignment:
Q  26 tgtctatgataaaagtatgttccctactttatctaatggtcaa 68  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  13856687 tgtctatgataaaggtatgttctctactttatctaatggtcaa 13856645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 25370577 - 25370507
Alignment:
Q  51 actttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgccac 121  Q
    |||| |||||||||||| ||  || |||||||| |||||||| ||||  ||||||||||||||||||||||    
T  25370577 acttgatctaatggtcagaaaaagctttcccatggtgggaaaaaactagcctttcccaaattaaatgccac 25370507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 3847987 - 3847887
Alignment:
Q  22 tgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagt-tttcccatagtgggaaacaactttcctttcccaaattaaatgcca 120  Q
    |||||||||||||||| | |||| ||  || || |||||||||||||||  |   |||||||| |||||||| || | ||||||||||||||||||||||    
T  3847987 tgagtgtctatgataacattatggtctatatttgatctaatggtcaaaaaaatactttcccatggtgggaaaaaagtctcctttcccaaattaaatgcca 3847888  T
Q  121 c 121  Q
    |    
T  3847887 c 3847887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 232028 - 232083
Alignment:
Q  53 tttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    ||||||||||||| ||||||   |||||||| |||||||||||||| |||||||||    
T  232028 tttatctaatggttaaaatttactttcccatggtgggaaacaacttccctttccca 232083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 34956388 - 34956313
Alignment:
Q  18 gtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaac 93  Q
    |||||||| ||||||||||||| | |||||  ||||| |||||| |||||||||||  ||||| ||| ||||||||    
T  34956388 gtgttgagagtctatgataaaaatgtgttctttacttgatctaagggtcaaaattaactttcctataatgggaaac 34956313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 45330671 - 45330564
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||| ||||||||||| | | | |||  ||||| ||||| |||||||| |||  ||| |||| |||||||||||||  |||||||||  |||||    
T  45330671 tggtgttgagagtctatgataagaatgtattcattacttaatctagtggtcaaatttaacttttccatggtgggaaacaactcccctttcccattttaaa 45330572  T
Q  116 tgccaccc 123  Q
    | ||||||    
T  45330571 ttccaccc 45330564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 11417733 - 11417687
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  11417733 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 11417687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 11417939 - 11417985
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  11417939 tttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 11417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 26611285 - 26611331
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  26611285 tttcccatggtgggaaaaaactctcctttcccaaattaaatgacacc 26611331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 29651334 - 29651380
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  29651334 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 29651380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 36865719 - 36865765
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  36865719 tttcccatggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 47376898 - 47376852
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    ||||||||  ||||||||||||  |||||||||||||||||||||||    
T  47376898 tttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 47377600 - 47377646
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||||||||  |||||||||||||||||| ||||    
T  47377600 tttcccatggtgggaaacaactcccctttcccaaattaaatggcacc 47377646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 50709096 - 50709022
Alignment:
Q  18 gtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaa 92  Q
    |||||||| ||||||||||||| | |||||  ||||| |||||| |||||||||||  ||||| ||| |||||||    
T  50709096 gtgttgagagtctatgataaaaatgtgttctttacttgatctaagggtcaaaattaactttcctataatgggaaa 50709022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 11680356 - 11680283
Alignment:
Q  43 tgttccctactttatctaatggtcaaaat-tagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    ||||||||| || |||||||||||||||  ||  |||||||| |||||||| ||||  ||||||||||||||||    
T  11680356 tgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaactaacctttcccaaattaaa 11680283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 11688635 - 11688562
Alignment:
Q  43 tgttccctactttatctaatggtcaaaat-tagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    ||||||||| || |||||||||||||||  ||  |||||||| |||||||| ||||  ||||||||||||||||    
T  11688635 tgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaactaacctttcccaaattaaa 11688562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 34371564 - 34371476
Alignment:
Q  20 gttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    |||||||||| ||||||||| |||||| | ||||  ||||||||| |||||  |  |||||||| ||||||||||| |  |||||||||    
T  34371564 gttgagtgtccatgataaaattatgtttcttactcaatctaatggacaaaaaaaactttcccatggtgggaaacaattcccctttccca 34371476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 45235916 - 45236008
Alignment:
Q  30 tatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    ||||||| || ||||||||  | || ||||||||| ||  ||||  |||||||| |||||||| |||| |||||| |||||||||||| ||||    
T  45235916 tatgatagaaatatgttcctcatttaatctaatggacatgattaactttcccatggtgggaaagaactctccttttccaaattaaatggcacc 45236008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 47326791 - 47326823
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttccca 108  Q
    |||||||| ||||||||||||||||||||||||    
T  47326791 tttcccatggtgggaaacaactttcctttccca 47326823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 47341587 - 47341619
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttccca 108  Q
    |||||||| ||||||||||||||||||||||||    
T  47341587 tttcccatggtgggaaacaactttcctttccca 47341619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 55514356 - 55514388
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttccca 108  Q
    |||||||| ||||||||||||||||||||||||    
T  55514356 tttcccatggtgggaaacaactttcctttccca 55514388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 38337417 - 38337525
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    |||||||||||||||||||||||||| ||||||| ||| || |||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  38337417 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaatta 38337516  T
Q  114 aatgccacc 122  Q
    || ||||||    
T  38337517 aacgccacc 38337525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 38337048 - 38336944
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||||||||  ||||||| ||||||| ||| || |||||| |||||||||||| |||||||| |||||||||||||| |||| |||||||||||    
T  38337048 tggtgttgagtgtct--gataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttcccttccccaaattaaa 38336951  T
Q  116 tgccacc 122  Q
    |||||||    
T  38336950 tgccacc 38336944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 44022031 - 44022135
Alignment:
Q  18 gtgttgagtgtctatgataaaagtatgttccctacttt-atctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaat 116  Q
    ||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| ||  ||||||||| |||| |||||||| |||||| |||   |||||    
T  44022031 gtgttgagtgtgtatgataaaagtatgtt-cctagtttaatctaatggtcaaatttttttttcccatggtggaaaacaactctccttttccatgctaaat 44022129  T
Q  117 gccacc 122  Q
    ||||||    
T  44022130 gccacc 44022135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 49287793 - 49287687
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||| || |||||||| | |||||||  ||||| ||||||  ||  |||||| |||||||||||| |||||||||||| |||||| | ||||||    
T  49287793 tggtgttgagagtgtatgataagactatgttctatacttaatctaaccgtttaaattaattttcccatagtaggaaacaactttactttcctatattaaa 49287694  T
Q  116 tgccacc 122  Q
    | |||||    
T  49287693 tcccacc 49287687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 19132814 - 19132861
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccaccc 123  Q
    |||||||| |||||||| |||||||||||||||||||||||| |||||    
T  19132814 tttcccatggtgggaaagaactttcctttcccaaattaaatggcaccc 19132861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 15450318 - 15450259
Alignment:
Q  29 ctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgg 88  Q
    ||||||||||| ||||||| |||||| ||||||||||||| ||||  |||||||| ||||    
T  15450318 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtgg 15450259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 17227015 - 17226968
Alignment:
Q  75 ttttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    ||||||||| |||||||| || | ||||||||||||||||||||||||    
T  17227015 ttttcccatggtgggaaagaaatctcctttcccaaattaaatgccacc 17226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 19132609 - 19132562
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccaccc 123  Q
    ||||||||||| ||||| |||| ||||||||||||||||||| |||||    
T  19132609 tttcccatagtaggaaagaactctcctttcccaaattaaatggcaccc 19132562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 36750439 - 36750485
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  36750439 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 36750485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 42108407 - 42108370
Alignment:
Q  85 gtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  42108407 gtgggaaacaacttccctttcccaaattaaacgccacc 42108370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 12801 - 12907
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||| ||||||||||||||  ||| |||||||||||    
T  12801 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattaactttcccatggtgggaaacaacttcacttccccaaattaaa 12900  T
Q  116 tgccacc 122  Q
     ||||||    
T  12901 cgccacc 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 12292 - 12184
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    |||| ||||||||||||||||||||| ||||||| ||| || |||||| ||||||||||| ||||| ||| ||||||||||||||  |||||||||||||    
T  12292 tctgatgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaattttctcatggtgggaaacaacttctctttcccaaatta 12193  T
Q  114 aatgccacc 122  Q
    || ||||||    
T  12192 aacgccacc 12184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 4554764 - 4554671
Alignment:
Q  15 ctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||| |||||| ||||||||||||    
T  4554764 ctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaattttcctttccca 4554671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 4555331 - 4555438
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||||||||| ||||||||||||||| | |||||||| || | |||||||||| |||||||| || ||||||||||| ||||||||| | ||||    
T  4555331 tggtgttgagtgtctacgataaaagtatgttctccactttatccaacgttcaaaattagctttcccatggtaggaaacaacttccctttcccatactaaa 4555430  T
Q  116 tgccaccc 123  Q
    ||||||||    
T  4555431 tgccaccc 4555438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 8040400 - 8040492
Alignment:
Q  30 tatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    ||||||| || ||||||||||| || ||||||||| ||  ||||  |||||||  |||||||| || ||||||||||||||||||||| ||||    
T  8040400 tatgatagaaatatgttccctatttaatctaatggacatgattaactttcccacggtgggaaagaaatttcctttcccaaattaaatggcacc 8040492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 26712364 - 26712422
Alignment:
Q  50 tactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    ||||| |||| ||||| |||||||| |||||||| |||||||||||||| |||||||||    
T  26712364 tacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26712422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 26982102 - 26982160
Alignment:
Q  50 tactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    ||||| |||| ||||| |||||||| |||||||| |||||||||||||| |||||||||    
T  26982102 tacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26982160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 17767546 - 17767639
Alignment:
Q  29 ctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    ||||||||||| |||||||  || || ||||||||||| ||||    |||||||| ||||||||||||  |||||||||| ||||||| |||||    
T  17767546 ctatgataaaaatatgttctttagttaatctaatggtctaaatctactttcccatggtgggaaacaacgatcctttcccatattaaatcccacc 17767639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 2319312 - 2319265
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccaccc 123  Q
    |||||||| |||||||| ||||  ||||||||||||||||||||||||    
T  2319312 tttcccatggtgggaaaaaactagcctttcccaaattaaatgccaccc 2319265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 8204166 - 8204120
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  8204166 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 8204120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 9142093 - 9142047
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||||||||| ||||||||| | |||||||||||    
T  9142093 tttcccatggtgggaaacaacttccctttcccatactaaatgccacc 9142047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 15184019 - 15184065
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  15184019 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 15184065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 33002818 - 33002864
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  33002818 tttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 33002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 39950450 - 39950404
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  39950450 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 39950404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 39167388 - 39167484
Alignment:
Q  22 tgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgc 118  Q
    |||||||||||||||| | |||| ||  || || |||||||||| ||||    |||||||||  ||||||| || | ||||||||||||||||||||    
T  39167388 tgagtgtctatgataacattatggtctatatttgatctaatggtaaaaaaatattttcccatgatgggaaagaagtctcctttcccaaattaaatgc 39167484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 27763521 - 27763413
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    ||||||||||||||||| |||||||| ||||||| ||| || |||||| ||||||||||||||||||| | |||||||||||||| |||| |||||||||    
T  27763521 tctggtgttgagtgtctttgataaaaatatgttctctatttaatctaacggtcaaaattagttttcccttggtgggaaacaacttcccttccccaaatta 27763422  T
Q  114 aatgccacc 122  Q
    |||| ||||    
T  27763421 aatgtcacc 27763413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 24126018 - 24125972
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||    
T  24126018 tttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 3543065 - 3543113
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacccc 124  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||||    
T  3543065 tttcccatggtgggaaaaaactctcctttcccaaattaaatggcacccc 3543113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 7193384 - 7193338
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  7193384 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 7193338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 24126720 - 24126766
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    ||||||||  ||||||||||||  |||||||||||||||||||||||    
T  24126720 tttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 33480630 - 33480676
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  33480630 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 3542860 - 3542819
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatg 117  Q
    |||||||| |||||||| |||| |||||||||||||||||||    
T  3542860 tttcccatggtgggaaaaaactctcctttcccaaattaaatg 3542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 22582481 - 22582522
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatg 117  Q
    |||||||| |||||||| |||| |||||||||||||||||||    
T  22582481 tttcccatggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 22587312 - 22587353
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatg 117  Q
    |||||||| |||||||| |||| |||||||||||||||||||    
T  22587312 tttcccatggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 33479742 - 33479701
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatg 117  Q
    |||||||| |||||||| |||| |||||||||||||||||||    
T  33479742 tttcccatggtgggaaataactctcctttcccaaattaaatg 33479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 27599317 - 27599211
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||||||||||||||| | | |||||  ||||| |||||||||||||| |||  |||||||| |||||||||||||  |||||||||  |||||    
T  27599317 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27599218  T
Q  116 tgccacc 122  Q
    |||||||    
T  27599217 tgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 46757530 - 46757449
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaact 97  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||   |||| ||| |||| ||||||||    
T  46757530 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttactttctcatggtggaaaacaact 46757449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 46759202 - 46759311
Alignment:
Q  14 tctggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaatta 113  Q
    ||||||||| ||| | ||| ||| |||||||||| |||||||||||||||||||| ||||| ||| | ||  ||||||||||||  ||||||||| | ||    
T  46759202 tctggtgttaagtatgtataatagaagtatgttctctactttatctaatggtcaagattagctttgctatgatgggaaacaactcccctttcccatacta 46759301  T
Q  114 aatgccaccc 123  Q
    ||||||||||    
T  46759302 aatgccaccc 46759311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 27600037 - 27600144
Alignment:
Q  16 tggtgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaa 115  Q
    |||||||||| ||||||||||| | | |||||  ||||| ||||| |||||||| |||  |||||||| |||||||||||||  |||||||||  |||||    
T  27600037 tggtgttgagagtctatgataagaatgtgttcattacttaatctagtggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27600136  T
Q  116 tgccaccc 123  Q
    ||||||||    
T  27600137 tgccaccc 27600144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 38779565 - 38779614
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacccca 125  Q
    |||||||| |||||||| |||| ||||||||||||||||||| |||||||    
T  38779565 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacccca 38779614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 668225 - 668178
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccaccc 123  Q
    |||||||| |||||||| |||| ||||||||||||||||||| |||||    
T  668225 tttcccatggtgggaaagaactctcctttcccaaattaaatggcaccc 668178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 45887341 - 45887278
Alignment:
Q  60 aatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgccaccc 123  Q
    |||||||||||  || |||||||| |||||||| ||||  |||||||||||||||| |||||||    
T  45887341 aatggtcaaaaaaagctttcccatggtgggaaaaaactagcctttcccaaattaaacgccaccc 45887278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 12732350 - 12732276
Alignment:
Q  19 tgttgagtgtctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgggaaac 93  Q
    ||||||| ||||||||||||| |||||||  ||| | ||||||||||||| |||   |||||||| |||||||||    
T  12732350 tgttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccatggtgggaaac 12732276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 17145668 - 17145622
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  17145668 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 17145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 37468956 - 37468910
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  37468956 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37468910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 37469007 - 37469053
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  37469007 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 38778900 - 38778854
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  38778900 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38778854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 41194559 - 41194513
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  41194559 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 41194513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 45887982 - 45888028
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| ||||  |||||||||||||||||||||||    
T  45887982 tttcccatggtgggaaaaaactagcctttcccaaattaaatgccacc 45888028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 7677811 - 7677852
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatg 117  Q
    |||||||| |||||||| |||| |||||||||||||||||||    
T  7677811 tttcccatggtgggaaagaactctcctttcccaaattaaatg 7677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 48259804 - 48259865
Alignment:
Q  60 aatggtcaaaattagttttcccatagtgggaaacaactttcctttcccaaattaaatgccac 121  Q
    |||||||| ||  ||||||||||| |||||||| ||||  | ||||||||||||||||||||    
T  48259804 aatggtcagaaaaagttttcccatggtgggaaaaaactaacatttcccaaattaaatgccac 48259865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 35771253 - 35771293
Alignment:
Q  68 aaattagttttcccatagtgggaaacaactttcctttccca 108  Q
    ||||||| |||||||| ||||||||||||||| ||||||||    
T  35771253 aaattagctttcccatggtgggaaacaactttgctttccca 35771293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 29938 - 29990
Alignment:
Q  54 ttatctaatggtcaaaattagttttcccatagtgggaaacaactttcctttcc 106  Q
    |||||||| ||| |||||||||||||||||||||| |||||||||||||||||    
T  29938 ttatctaacggttaaaattagttttcccatagtggaaaacaactttcctttcc 29990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 36620 - 36664
Alignment:
Q  54 ttatctaatggtcaaaattagttttcccatagtgggaaacaactt 98  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  36620 ttatctaacagtcaaaattagttttcccatagtgggaaacaactt 36664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 11873 - 11932
Alignment:
Q  29 ctatgataaaagtatgttccctactttatctaatggtcaaaattagttttcccatagtgg 88  Q
    ||||||||||| ||||||| |||||| ||||||||||||| ||||  |||||||| ||||    
T  11873 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtgg 11932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 162 - 208
Alignment:
Q  76 tttcccatagtgggaaacaactttcctttcccaaattaaatgccacc 122  Q
    |||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  162 tttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University