View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9496_low_12 (Length: 409)
Name: NF9496_low_12
Description: NF9496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9496_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26803825 - 26804048
Alignment:
| Q |
1 |
gagagagaggggtagggacttacttgtcatcatgaactggaactccccattcttcatcatgataagcaatatagataggatctgtttatcaaaagagaca |
100 |
Q |
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| T |
26803825 |
gagagagaggggtagggacttacttgtcatcatgaactggaactccccattcttcatcatgataagcaatatagataggatctgtttatcaaaagagaca |
26803924 |
T |
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| Q |
101 |
ttaaagttaacacttgttgctttaagataaaacaaaattgcactaagtatcaaaaagggtacatatgaatttgtattaaaatatgagtttagtttttata |
200 |
Q |
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| T |
26803925 |
ttaaagttaacacttgttgctttaagataaaacaaaattgcactaaatatcaaaaagggtacctatgaatttgtattaaaatatgagtttagtttttata |
26804024 |
T |
|
| Q |
201 |
aacctataataaattaaactatca |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
26804025 |
aacctataataaattaaactatca |
26804048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 223 - 393
Target Start/End: Original strand, 26804105 - 26804273
Alignment:
| Q |
223 |
catttttaatattcagacaattataattgattgactttctaataattttcttttagaattataaatcttttaaaatatttataactaccaattacctgaa |
322 |
Q |
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| T |
26804105 |
catttttaatattcagacaattataattgattgactttctaataattttcttttagaatta--aatcttttaaaatatttataactaccaattacctgaa |
26804202 |
T |
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| Q |
323 |
ttggttgtgatgaagctgcatctcttctcctcttgattagtagtctttgaatcaagagcacttgaaggatc |
393 |
Q |
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| T |
26804203 |
ttggttgtgatgaagctgcatctcttctcctcttgattagtagtctttgaatcaagagcacttgaaggatc |
26804273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 18416999 - 18417082
Alignment:
| Q |
18 |
acttacttgtcatcatgaactggaactccccattcttcatcatgataagcaatatagataggatctgttt-atcaaaagagaca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| || |||||||||| |
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| T |
18416999 |
acttacttgtcatcatgaactggaactccccattcctcatcatgataagcaatatagatgggatctatttaataaaaagagaca |
18417082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 54546811 - 54546851
Alignment:
| Q |
21 |
tacttgtcatcatgaactggaactccccattcttcatcatg |
61 |
Q |
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| T |
54546811 |
tacttgtcgtcatgtactggaactccccattcttcatcatg |
54546851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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