View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9496_low_13 (Length: 406)

Name: NF9496_low_13
Description: NF9496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9496_low_13
NF9496_low_13
[»] chr7 (18 HSPs)
chr7 (16-391)||(8629009-8629384)
chr7 (16-139)||(8585274-8585397)
chr7 (16-139)||(8654927-8655050)
chr7 (16-141)||(8667896-8668021)
chr7 (24-139)||(13333024-13333139)
chr7 (18-143)||(6789991-6790116)
chr7 (24-139)||(10493942-10494057)
chr7 (19-120)||(8671217-8671318)
chr7 (55-140)||(8582216-8582301)
chr7 (52-137)||(8659876-8659961)
chr7 (55-139)||(1301980-1302064)
chr7 (50-142)||(3147783-3147875)
chr7 (55-133)||(17268455-17268533)
chr7 (34-139)||(8546127-8546232)
chr7 (63-138)||(8588034-8588109)
chr7 (55-142)||(17260757-17260844)
chr7 (78-140)||(8576865-8576927)
chr7 (55-139)||(8647390-8647474)
[»] chr4 (3 HSPs)
chr4 (16-143)||(9335455-9335582)
chr4 (24-139)||(30775737-30775852)
chr4 (55-142)||(35132962-35133049)
[»] chr2 (9 HSPs)
chr2 (24-135)||(16661564-16661675)
chr2 (55-139)||(16657085-16657169)
chr2 (55-143)||(12235205-12235293)
chr2 (59-139)||(43625930-43626010)
chr2 (55-132)||(7542742-7542819)
chr2 (86-139)||(12244974-12245027)
chr2 (95-139)||(11999950-11999994)
chr2 (61-133)||(12258155-12258227)
chr2 (96-139)||(39373417-39373460)
[»] chr1 (4 HSPs)
chr1 (24-138)||(34466362-34466476)
chr1 (61-139)||(4678126-4678204)
chr1 (55-143)||(15595552-15595641)
chr1 (55-125)||(52549102-52549172)
[»] chr5 (2 HSPs)
chr5 (49-139)||(28220461-28220551)
chr5 (24-121)||(42555530-42555627)
[»] chr8 (1 HSPs)
chr8 (16-139)||(43745324-43745447)
[»] chr6 (3 HSPs)
chr6 (25-142)||(28911068-28911185)
chr6 (16-132)||(11171047-11171163)
chr6 (16-132)||(11276431-11276547)


Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 8629009 - 8629384
Alignment:
Q  16 ttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  8629009 ttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaacaggatcactaaacttcctaccaa 8629108  T
Q  116 ttaacctcttggcatctgaaaaaataactcaacttgttaagtgttaacactctcgtcattcatttgttctgctaacatagatataagcattaatataaat 215  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8629109 ttaacctcttggcatctgaaaatataactcaaattgttaagtgttaacactctcgtcattcatttgttctgctaacatagatataagcattaatataaat 8629208  T
Q  216 taatgtttgcaaatgtgatataagttcgaaaattaggatttttgatgttattgatactaactacaggtacaacaaatttgatggaggttgcatcctccgc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8629209 taatgtttgcaaatgtgatataagttcgaaaattaggatttttgatgttattgatactaactacaggtataacaaatttgatggaggttgcatcctccgc 8629308  T
Q  316 attttaccacagttctaagttgcagtctgaaaccattaaaggaggccacaatatcatgattataaaagtctctgct 391  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8629309 attttaccacagttctaagttgcagtctgaaaccattaaatgaggccacaatatcatgattataaaagtctctgct 8629384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 8585397 - 8585274
Alignment:
Q  16 ttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaa 115  Q
    ||||||| ||||||||| |||||||||| |||||| ||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||||||    
T  8585397 ttaacagtaatcataggtttgtcattaacaccagagataaccttgaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaa 8585298  T
Q  116 ttaacctcttggcatctgaaaaaa 139  Q
    ||||||||||||||||||||||||    
T  8585297 ttaacctcttggcatctgaaaaaa 8585274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 8654927 - 8655050
Alignment:
Q  16 ttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaa 115  Q
    ||||||| |||||| || |||||||||| ||||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  8654927 ttaacagtaatcatgggtttgtcattaacaccagaagtaaccatgaatggccacaacatgatatccttttgaacaataggatcactatacttcctaccaa 8655026  T
Q  116 ttaacctcttggcatctgaaaaaa 139  Q
    |||||||||| |||||| ||||||    
T  8655027 ttaacctcttagcatctaaaaaaa 8655050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 8667896 - 8668021
Alignment:
Q  16 ttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaa 115  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||  |||||  ||||||||| ||| |||||||||||||||||||    
T  8667896 ttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaacggggtcactaaacttcctaccaa 8667995  T
Q  116 ttaacctcttggcatctgaaaaaata 141  Q
    |||||||||| ||||||| |||||||    
T  8667996 ttaacctcttagcatctgcaaaaata 8668021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 13333139 - 13333024
Alignment:
Q  24 aatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctc 123  Q
    ||||||||||||||| || | ||||||| |||||||||||||||| ||||| ||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  13333139 aatcataggcttgtcgttgacaccagaagtaaccttgaatggccacaacattatatcattttgaacaaccggatcactaaacttcctaccaattaacctc 13333040  T
Q  124 ttggcatctgaaaaaa 139  Q
    || |||||||||||||    
T  13333039 ttagcatctgaaaaaa 13333024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 6789991 - 6790116
Alignment:
Q  18 aacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaatt 117  Q
    |||| ||||||| ||||||||||| |  |||| ||| |||||||||||||| ||||| ||||| ||||||||||  | ||||||||||||||||||||||    
T  6789991 aacaacaatcatgggcttgtcattgacgccagcaatgaccttgaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaatt 6790090  T
Q  118 aacctcttggcatctgaaaaaataac 143  Q
    |||||||| |||||||||||||||||    
T  6790091 aacctcttagcatctgaaaaaataac 6790116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 10494057 - 10493942
Alignment:
Q  24 aatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctc 123  Q
    ||||||||| |||||||| | ||| ||| |||||||||||||||| ||||| ||||| ||||||||||  ||||||||||||||||| ||||||||||||    
T  10494057 aatcataggtttgtcattgacacctgaagtaaccttgaatggccacaacattatatcgttttgaacaaccggatcactaaacttcctgccaattaacctc 10493958  T
Q  124 ttggcatctgaaaaaa 139  Q
    || |||||| ||||||    
T  10493957 ttagcatctaaaaaaa 10493942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 8671318 - 8671217
Alignment:
Q  19 acagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaatta 118  Q
    |||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||  |||||  |||||||||  |||||||||||||||||||||||||    
T  8671318 acagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaatta 8671219  T
Q  119 ac 120  Q
    ||    
T  8671218 ac 8671217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 8582216 - 8582301
Alignment:
Q  55 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaat 140  Q
    |||||||| ||||| ||| ||||||||||||||||||||| ||||||| | ||||| |||||||||||||| ||||||||||||||    
T  8582216 accttgaagggccacaacttgatatccttttgaacaatggaatcactatatttccttccaattaacctctttgcatctgaaaaaat 8582301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 8659876 - 8659961
Alignment:
Q  52 ataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaa 137  Q
    ||||||||||||||||| ||||| || || ||||||||||  | |||||||||||||||||||||||| ||||| |||||||||||    
T  8659876 ataaccttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctctttgcatctgaaaa 8659961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 1301980 - 1302064
Alignment:
Q  55 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 139  Q
    |||||||||||||| ||||| || || ||||||||||  | |||||||||||||||||||||||| ||||| |||||||||||||    
T  1301980 accttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctcttagcatctgaaaaaa 1302064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 3147783 - 3147875
Alignment:
Q  50 aaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaataa 142  Q
    |||| |||||||||||||| ||||| ||||| ||||||||||  | ||||| |||||||||||||||||||||||| |||||| | |||||||    
T  3147783 aaatgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctctttgcatctaacaaaataa 3147875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 17268455 - 17268533
Alignment:
Q  55 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctg 133  Q
    ||||||||||||||  |||| ||||| ||||| || |  |||||||||||||||||||||||||  ||||| |||||||    
T  17268455 accttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 17268533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 8546127 - 8546232
Alignment:
Q  34 ttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctg 133  Q
    |||||||||| ||| ||||| ||||| || ||||| ||||  | ||| || ||||||| || ||||||| | ||||| |||||||||||||| |||||||    
T  8546127 ttgtcattaacaccggaaatgaccttaaagggccacaacagtagatcattctgaacaaaggaatcactatatttccttccaattaacctctttgcatctg 8546226  T
Q  134 aaaaaa 139  Q
     |||||    
T  8546227 caaaaa 8546232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 8588034 - 8588109
Alignment:
Q  63 tggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaa 138  Q
    |||||| ||||| ||||| ||||||||||||| || ||||||||||| ||  |  |||||||| ||||||||||||    
T  8588034 tggccacaacatcatatcattttgaacaatggaataactaaacttcccacagaccaacctctttgcatctgaaaaa 8588109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 17260757 - 17260844
Alignment:
Q  55 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaataa 142  Q
    ||||||||||||||  |||| ||||| ||||| || |  |||||||||||||||||||||| ||  ||||| |||||||  |||||||    
T  17260757 accttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaactagtctcttagcatctgtcaaaataa 17260844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 8576865 - 8576927
Alignment:
Q  78 atccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaat 140  Q
    |||||| |||||||||| ||||||| | ||||| |||||||||||||| | ||||| ||||||    
T  8576865 atccttctgaacaatggaatcactatatttccttccaattaacctctttgtatctgtaaaaat 8576927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 8647390 - 8647474
Alignment:
Q  55 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 139  Q
    |||||||||||||| ||| |  |||| || |||||||  | ||||  |||||||||||| ||||||||||| ||||||| |||||    
T  8647390 accttgaatggccacaacttcttatcattctgaacaacagaatcaaaaaacttcctaccgattaacctcttagcatctggaaaaa 8647474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 9335582 - 9335455
Alignment:
Q  16 ttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaa 115  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||  |||||  |||||||||   ||||||||||||||||||||     
T  9335582 ttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaaccagatcactaaacttcctaccag 9335483  T
Q  116 ttaacctcttggcatctgaaaaaataac 143  Q
    |||| ||||| ||||||| |||||||||    
T  9335482 ttaatctcttagcatctgcaaaaataac 9335455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 30775737 - 30775852
Alignment:
Q  24 aatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctc 123  Q
    |||||| || |||||||||| |||||||| ||||||||||||||| ||||  ||||| ||||||||||  || || ||||| |||||||||||||||||     
T  30775737 aatcatgggtttgtcattaacaccagaaacaaccttgaatggccacaacaaaatatctttttgaacaacagggtcgctaaatttcctaccaattaacctt 30775836  T
Q  124 ttggcatctgaaaaaa 139  Q
    || |||||||||||||    
T  30775837 ttagcatctgaaaaaa 30775852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 35132962 - 35133049
Alignment:
Q  55 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaataa 142  Q
    |||||||||||||| | ||  ||||| | ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  35132962 accttgaatggccatagcagtatatcatcttgaacaataggatcactaaacttcctaccaattaaccttttagcatctgaaaaaataa 35133049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 16661675 - 16661564
Alignment:
Q  24 aatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctc 123  Q
    |||| |||| |||||||||| ||||| |||||||||||| ||||| ||||  ||||| |||||||||| ||| |||||||| ||||||||||||||||||    
T  16661675 aatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaacctc 16661576  T
Q  124 ttggcatctgaa 135  Q
    || |||||||||    
T  16661575 ttagcatctgaa 16661564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 16657169 - 16657085
Alignment:
Q  55 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 139  Q
    |||||||||||||| || |||||||| ||||||||||  |||||||||||||||||||| |||||||| || |||||||||||||    
T  16657169 accttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 16657085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 12235205 - 12235293
Alignment:
Q  55 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaataac 143  Q
    |||||||||||||| ||||| | ||| | ||||||||   ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  12235205 accttgaatggccacaacatcacatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagcatctgaaaaattaac 12235293  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 43625930 - 43626010
Alignment:
Q  59 tgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 139  Q
    |||||||||| ||||||||||| ||||||||||  | |||||||||||||||||| ||||||||||| ||||||| |||||    
T  43625930 tgaatggccacaacatgatatcattttgaacaacagaatcactaaacttcctaccgattaacctcttagcatctggaaaaa 43626010  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 7542742 - 7542819
Alignment:
Q  55 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatct 132  Q
    |||||||||||||| ||||  ||||| | ||||||||  |||||||||||||||||||||||||||||||| ||||||    
T  7542742 accttgaatggccataacagtatatcatcttgaacaacaggatcactaaacttcctaccaattaacctcttagcatct 7542819  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 12245027 - 12244974
Alignment:
Q  86 gaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 139  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||    
T  12245027 gaacaataggatcactaaacttcctaccaattaatctcttagcatctgaaaaaa 12244974  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 11999950 - 11999994
Alignment:
Q  95 gatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 139  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||    
T  11999950 gatcactaaacttccaaccaattaacctcttagcatctgaaaaaa 11999994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 12258227 - 12258155
Alignment:
Q  61 aatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctg 133  Q
    |||||||| ||||| ||||| | |||||| |   ||||||||||||||||||||||||||||||| |||||||    
T  12258227 aatggccacaacattatatcatcttgaactacttgatcactaaacttcctaccaattaacctcttagcatctg 12258155  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 39373417 - 39373460
Alignment:
Q  96 atcactaaacttcctaccaattaacctcttggcatctgaaaaaa 139  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  39373417 atcattaaacttcctaccaattaacctcttagcatctgaaaaaa 39373460  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 34466476 - 34466362
Alignment:
Q  24 aatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctc 123  Q
    |||||| ||||||||||||| ||||| |||||| ||||||||||| ||||| |||||  ||||||||   ||||||||||| || || ||||||||||||    
T  34466476 aatcattggcttgtcattaacaccagcaataactttgaatggccataacatcatatctgtttgaacatcaggatcactaaattttctgccaattaacctc 34466377  T
Q  124 ttggcatctgaaaaa 138  Q
    || ||||||||||||    
T  34466376 ttagcatctgaaaaa 34466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 4678204 - 4678126
Alignment:
Q  61 aatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 139  Q
    |||||||| |||||||| || ||||||||||  | ||||||| || ||||||||||||||||||| ||||||| |||||    
T  4678204 aatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctgcaaaaa 4678126  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 15595552 - 15595641
Alignment:
Q  55 accttgaatggccagaacatgatatccttttgaacaatggga-tcactaaacttcctaccaattaacctcttggcatctgaaaaaataac 143  Q
    |||||||||||||| ||| | ||||| ||||||||||   || ||||||||||||||||  ||||| ||||| |||||||||||||||||    
T  15595552 accttgaatggccacaactttatatcattttgaacaaacagaatcactaaacttcctactgattaatctcttagcatctgaaaaaataac 15595641  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 52549172 - 52549102
Alignment:
Q  55 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctctt 125  Q
    |||||||||| ||| ||||  ||||| | ||||||||  ||||||||||||||| ||||||||||||||||    
T  52549172 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctctt 52549102  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 28220461 - 28220551
Alignment:
Q  49 gaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 139  Q
    ||||| |||||||||||||| ||| | ||||| | ||||||||  |  ||||||||||||||||||||||||||||| |||||||||||||    
T  28220461 gaaatgaccttgaatggccacaactttatatcatcttgaacaacagagtcactaaacttcctaccaattaacctcttagcatctgaaaaaa 28220551  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 42555627 - 42555530
Alignment:
Q  24 aatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacc 121  Q
    |||||| |||||| |||| |  || ||||| |||||||||||||| ||| | || || ||||||||||    |||| |||||||||||||||||||||    
T  42555627 aatcatgggcttgccatttattccggaaatgaccttgaatggccacaacttcatgtcattttgaacaacataatcattaaacttcctaccaattaacc 42555530  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 43745324 - 43745447
Alignment:
Q  16 ttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaa 115  Q
    ||||||| |||||  || |||||||| |  || ||||| |||||||| ||||| ||| | ||||| |||||||||   | |||| |||||||||||||||    
T  43745324 ttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggccacaacttcatatcattttgaacatcagaatcattaaacttcctaccaa 43745423  T
Q  116 ttaacctcttggcatctgaaaaaa 139  Q
    |||||||||| |||||||| ||||    
T  43745424 ttaacctcttagcatctgacaaaa 43745447  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 28911068 - 28911185
Alignment:
Q  25 atcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctct 124  Q
    ||||| || |||||||| | ||| | ||| |||||||| ||| | |||||   ||| |||||||||| ||||||||||||||||||| |||||| |||||    
T  28911068 atcatggggttgtcattgacaccggcaatgaccttgaacggcgacaacattgaatcgttttgaacaacgggatcactaaacttcctatcaattatcctct 28911167  T
Q  125 tggcatctgaaaaaataa 142  Q
    | |||||||  |||||||    
T  28911168 tagcatctgtcaaaataa 28911185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 11171047 - 11171163
Alignment:
Q  16 ttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaa 115  Q
    |||||| ||||||| || |||||||| ||  ||  ||| || ||||||||||| ||| | | |||  |||| || |||||||||||||| |||| |||||    
T  11171047 ttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaa 11171146  T
Q  116 ttaacctcttggcatct 132  Q
    ||| |||||| ||||||    
T  11171147 ttagcctctttgcatct 11171163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 11276431 - 11276547
Alignment:
Q  16 ttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaa 115  Q
    |||||| ||||||| || |||||||| ||  ||  ||| || ||||||||||| ||| | | |||  |||| || |||||||||||||| |||| |||||    
T  11276431 ttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaa 11276530  T
Q  116 ttaacctcttggcatct 132  Q
    ||| |||||| ||||||    
T  11276531 ttagcctctttgcatct 11276547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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