View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9496_low_14 (Length: 385)

Name: NF9496_low_14
Description: NF9496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9496_low_14
NF9496_low_14
[»] chr3 (10 HSPs)
chr3 (9-189)||(34518422-34518602)
chr3 (9-189)||(27633601-27633784)
chr3 (83-181)||(34527457-34527555)
chr3 (299-369)||(27633412-27633482)
chr3 (299-368)||(34518195-34518264)
chr3 (299-369)||(34527210-34527280)
chr3 (307-362)||(34506613-34506668)
chr3 (299-369)||(27617821-27617891)
chr3 (108-189)||(27618062-27618143)
chr3 (108-189)||(34506858-34506939)
[»] scaffold1215 (1 HSPs)
scaffold1215 (307-369)||(1375-1437)
[»] chr2 (2 HSPs)
chr2 (307-369)||(10527375-10527437)
chr2 (307-369)||(10534187-10534249)
[»] chr4 (1 HSPs)
chr4 (311-344)||(25273449-25273482)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 34518602 - 34518422
Alignment:
Q  9 aatgatgtcctcctgagtatggattgaatggaccctgaaagtttgttgttaatttggatatgatgaaggaaaagtgaggttaaaaattaaaccttttcat 108  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34518602 aatgatgtcctcctgagtatggattggatggaccctgaaagtttgttgttaatttggatatgatgaaggaaaagtgaggttaaaaattaaaccttttcgt 34518503  T
Q  109 tgttatggagtttttaaaactgaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34518502 tgttatggagtttttaaaactgaatgggattattatgaaaaccttcaaaccaaatcctttacaaatgtttgctgaaacaaa 34518422  T

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Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 27633784 - 27633601
Alignment:
Q  9 aatgatgtcctcctgagtatggattgaat---ggaccctgaaagtttgttgttaatttggatatgatgaaggaaaagtgaggttaaaaattaaacctttt 105  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27633784 aatgatgtcctcctgagtatggattgaataatggaccctgaaagtttgttgttaatttggatataatgaaggaaaagtgaggttaaaaattaaacctttt 27633685  T
Q  106 cattgttatggagtttttaaaactgaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa 189  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27633684 cattgttatggagtttttaaaactcaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa 27633601  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 34527555 - 34527457
Alignment:
Q  83 tgaggttaaaaattaaaccttttcattgttatggagtttttaaaactgaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgct 181  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  34527555 tgaggttaaaaattaaacattttctttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgct 34527457  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 27633482 - 27633412
Alignment:
Q  299 agacgtagtttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatgctgattcatttt 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27633482 agacgtagtttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatgctgattcatttt 27633412  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 34518264 - 34518195
Alignment:
Q  299 agacgtagtttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatgctgattcattt 368  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34518264 agacgtagtttgtatgtcaagcaaattggagttcttgctctagaaataacattctgatgctgattcattt 34518195  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 34527280 - 34527210
Alignment:
Q  299 agacgtagtttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatgctgattcatttt 369  Q
    ||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  34527280 agacgtactttttatgtcatgcaaattggagttctcgttctagaaataacattctgatgctgatccatttt 34527210  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 362
Target Start/End: Complemental strand, 34506668 - 34506613
Alignment:
Q  307 tttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatgctgat 362  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  34506668 tttgtatgtcatgcaaattggagttcttgttctagaaataacattcggattctgat 34506613  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 27617891 - 27617821
Alignment:
Q  299 agacgtagtttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatgctgattcatttt 369  Q
    ||||||| ||||| ||||| |||||||||||||||| ||||||||||||||||| ||| ||||| ||||||    
T  27617891 agacgtactttgtctgtcatgcaaattggagttcttattctagaaataacattcggattctgatccatttt 27617821  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 27618143 - 27618062
Alignment:
Q  108 ttgttatggagtttttaaaactgaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa 189  Q
    |||||||||||||||| ||||||| |  |||||| |||||| ||| |||||||||| |||| ||||| ||||||||||||||    
T  27618143 ttgttatggagttttttaaactgattaagattatcatgaaagcctctaaaccaaattcttttcaaatctttgctgaaacaaa 27618062  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 34506939 - 34506858
Alignment:
Q  108 ttgttatggagtttttaaaactgaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa 189  Q
    |||||||||||||||| ||||||| |  |||||| |||||| ||| |||||||||  |||| ||||| |||| |||||||||    
T  34506939 ttgttatggagttttttaaactgattaagattatcatgaaagcctctaaaccaaactcttttcaaatctttgttgaaacaaa 34506858  T

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Target: scaffold1215 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 1437 - 1375
Alignment:
Q  307 tttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatgctgattcatttt 369  Q
    ||||||||||| ||||| || ||||||||||||||||||||| | ||||||||||| ||||||    
T  1437 tttgtatgtcatgcaaaatgaagttcttgttctagaaataacttgctgatgctgatccatttt 1375  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 10527437 - 10527375
Alignment:
Q  307 tttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatgctgattcatttt 369  Q
    ||||||||||| ||||| || ||||||||||||||||||||| | ||||||||||| ||||||    
T  10527437 tttgtatgtcatgcaaaatgaagttcttgttctagaaataacttgctgatgctgatccatttt 10527375  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 10534249 - 10534187
Alignment:
Q  307 tttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatgctgattcatttt 369  Q
    ||||||||||| ||||| || ||||||||||||||||||||| | ||||||||||| ||||||    
T  10534249 tttgtatgtcatgcaaaatgaagttcttgttctagaaataacttgctgatgctgatccatttt 10534187  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 25273449 - 25273482
Alignment:
Q  311 tatgtcaagcaaattggagttcttgttctagaaa 344  Q
    |||||||||||||||||||||||||| |||||||    
T  25273449 tatgtcaagcaaattggagttcttgtgctagaaa 25273482  T

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