View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9496_low_16 (Length: 350)
Name: NF9496_low_16
Description: NF9496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9496_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 34565974 - 34565788
Alignment:
| Q |
1 |
aacagaaagttgaaagtggtaggcttaacaaaatactaatccaaagagatttatgaattaacaaaaaacatcaaattatctattcaggaacattttgtgc |
100 |
Q |
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| T |
34565974 |
aacagaaagttgaaagtggtaggcttaacaaaatactaatccaaagagatttatgaattaacaaaacacatcaaattatctattcaggaacattttgtgc |
34565875 |
T |
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| Q |
101 |
ttccaaatctaacttgtcatcaaccacatcatcattagtttggtcttcctcattcgcttggtctatagaatgttggatgggttggaa |
187 |
Q |
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| T |
34565874 |
ttccaaatctaacttgtcatcaaccacattatcattagtttggtcttcctcattggcttggtctatagaatgttggatgggttggaa |
34565788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 188 - 331
Target Start/End: Complemental strand, 34565746 - 34565603
Alignment:
| Q |
188 |
tgttcaacgaccttattcgtttttgccaattcttcctgaagttgatctctttcatttctcatttcttcaagctcgtgcctttgcacccactcggttgaag |
287 |
Q |
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| T |
34565746 |
tgttcaacgaccttattcgtttttgccaattcttcctgaagttgatctctttcatttctcatttgttcaagctcgtgcctttgcacccactcggatgaag |
34565647 |
T |
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| Q |
288 |
aagaaccagagccacgataatttggacgtcttgctagtacagag |
331 |
Q |
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| T |
34565646 |
aagaaccagagccatgataatttggacgtcttgctagtacagag |
34565603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 36092183 - 36092099
Alignment:
| Q |
228 |
gttgatctctttcatttctcatttcttcaagctcgtgcctttgcacccactcggttgaagaagaaccagagccacgataatttgg |
312 |
Q |
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| T |
36092183 |
gttgatctctttcatttctcatttcttcaagttcatgtctttgtacccactcagttgatgaagaacatgagccacgataatttgg |
36092099 |
T |
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