View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9496_low_17 (Length: 328)
Name: NF9496_low_17
Description: NF9496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9496_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 8289835 - 8290135
Alignment:
| Q |
18 |
aataaacggtctagttgggacatgtcgagttccaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctggtctgaga |
117 |
Q |
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| T |
8289835 |
aataaacggtctagttgggacatgtcgagtttcaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctggtgtgaga |
8289934 |
T |
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| Q |
118 |
ataacataatttcatttctcttataatatttattttctcataataatgcgaaaaattttgaaaatagaaaaagttagacacccttgaaagatataggata |
217 |
Q |
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| T |
8289935 |
ataacataatttcatttctcttataatatttattttctcataataatgcgaaaaattttgaaaatagaaaaagttagacacgcttcaaagatataggata |
8290034 |
T |
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| Q |
218 |
ggaaatatttgaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcaccttt |
317 |
Q |
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| T |
8290035 |
ggaaatatttgaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcaccttt |
8290134 |
T |
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| Q |
318 |
g |
318 |
Q |
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| T |
8290135 |
g |
8290135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 229 - 318
Target Start/End: Original strand, 8257440 - 8257529
Alignment:
| Q |
229 |
aacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacctttg |
318 |
Q |
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| T |
8257440 |
aacctgtccataagtatcaaccgttgattgaactaggtttttgacttgatcttcatctgtgacatcgcagtggatgtaagtgcacctttg |
8257529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 227 - 318
Target Start/End: Original strand, 8259785 - 8259876
Alignment:
| Q |
227 |
tgaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacctttg |
318 |
Q |
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| T |
8259785 |
tgaacctgtccataagtatctaccgttgatcgaacgagatttttgacttgatcttcatctgccacatcacaatggatgtaagtgcacctttg |
8259876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 8309333 - 8309423
Alignment:
| Q |
228 |
gaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacctttg |
318 |
Q |
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| T |
8309333 |
gaacctgcccataagtattgaccgttgattgaacgagatttttaacttgatcttcatctgtcacgtcacaatggatgtaggtgcacctttg |
8309423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 8259431 - 8259524
Alignment:
| Q |
16 |
caaataaacggtctagttgggacatgtcgagttccaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctg |
109 |
Q |
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| T |
8259431 |
caaataaacggtcaagttgggacatatcaagttccattactgtttgatctgtgggactaacgattccagcattgctgaacattatatctacctg |
8259524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 8257123 - 8257216
Alignment:
| Q |
16 |
caaataaacggtctagttgggacatgtcgagttccaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctg |
109 |
Q |
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| T |
8257123 |
caaataaacggtcaaattgggacatgtcaagttccatgattgtttgatcagtgggactagcgattccagcattgctgaacattatatctacctg |
8257216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 8308890 - 8309010
Alignment:
| Q |
16 |
caaataaacggtctagttgggacatgtcgagttccaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctggtctga |
115 |
Q |
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| T |
8308890 |
caaataaacggtcaagttgggacatatcaagttccattattgtttgagctgtggaactaatgattccagcattgctgaacatgatatccagctgttgtga |
8308989 |
T |
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| Q |
116 |
gaataacataatttcatttct |
136 |
Q |
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| T |
8308990 |
gaataacaaaatttcatttct |
8309010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 8262857 - 8262940
Alignment:
| Q |
230 |
acctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcac |
313 |
Q |
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| T |
8262857 |
acctgtccataagcattgacagttgattgaacgagatttttaacttgatcttcatttgctatatcacaatgaatgtaggtgcac |
8262940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 8325364 - 8325415
Alignment:
| Q |
233 |
tgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgt |
284 |
Q |
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| T |
8325364 |
tgtccataagtattgactgttgattgaacgagatttttgacttgatcttcgt |
8325415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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