View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9496_low_18 (Length: 277)
Name: NF9496_low_18
Description: NF9496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9496_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 27634041 - 27633775
Alignment:
| Q |
1 |
acaacattggagcttcatcttcaacaacacctactgaggtgttacaagaaattcctgttttcgatattcgcatgatgaatgaggttgacgatcacagtat |
100 |
Q |
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| T |
27634041 |
acaacattggagcttcatcttcaacaacacctactgaggtgtcacaagatattcctgttttcgatattcgcatgatgaatgaggttgacgatcacagtat |
27633942 |
T |
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| Q |
101 |
ttcggtggatgagaaaggttgttttgtatatttgattttaataatatttatgtatgtgtgtgattactatgttctgtatgatatatcaattttgttcttc |
200 |
Q |
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| T |
27633941 |
ttcggtggatgagaaaggttgttttttatatttgattttaataatatttatgaatgtgtgtgattactatgttctgtatgatatatcaattttgttcttc |
27633842 |
T |
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| Q |
201 |
ttggatgtattttatagaatagattgattatatgtcaagtcttcaatttaccttagcaatgatgtcc |
267 |
Q |
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| T |
27633841 |
ttggatgtattttatagaatagattgattatatgtcaagtcttcaatttaccttagaaatgatgtcc |
27633775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 34518859 - 34518593
Alignment:
| Q |
1 |
acaacattggagcttcatcttcaacaacacctactgaggtgttacaagaaattcctgttttcgatattcgcatgatgaatgaggttgacgatcacagtat |
100 |
Q |
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| T |
34518859 |
acaacattggagcttcatcttcaacaacacctactgaggtgtcacaagatattcctgtttttgatattcgcatgatgaataaagttgacgatcacagtat |
34518760 |
T |
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| Q |
101 |
ttcggtggatgagaaaggttgttttgtatatttgattttaataatatttatgtatgtgtgtgattactatgttctgtatgatatatcaattttgttcttc |
200 |
Q |
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| T |
34518759 |
ttcggtggatgagaaaggttgttttttatatttgattttaataatatttatgcatgtgtgtgattactatgttctgtatgatatatcaattttgttcttc |
34518660 |
T |
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| Q |
201 |
ttggatgtattttatagaatagattgattatatgtcaagtcttcaatttaccttagcaatgatgtcc |
267 |
Q |
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| T |
34518659 |
ttggatgtattttatagaatagattgattatatgtcaagtcttcaatttaccttagaaatgatgtcc |
34518593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 34527656 - 34527592
Alignment:
| Q |
179 |
tgatatatcaattttgttcttcttggatgtattttatagaatagattgattatatgtcaagtctt |
243 |
Q |
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| T |
34527656 |
tgatatatcaattttattcttcttggatgtattttattgaagagattgattatatgtcaagtctt |
34527592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 34527799 - 34527707
Alignment:
| Q |
72 |
atgatgaatgaggttgacgatcacagtatttcggtggatgagaaaggttgttttgtat-atttgattttaataatatttatgtatgtgtgtga |
163 |
Q |
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| T |
34527799 |
atgacgaatgaggttgatgatcacagtatttctggagatgagaaaggttgttttttttaatttgattttaataatctttctttatgtgtgtga |
34527707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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