View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9496_low_4 (Length: 525)
Name: NF9496_low_4
Description: NF9496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9496_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 49691293 - 49691563
Alignment:
| Q |
1 |
tattgcgtcgcaaggtaatacattaacaaaacatacagaaacagtttaagacattacatggatcattagagttttgcttactatttcctatttgaattat |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49691293 |
tattgcgtcgcaaggtaatgcattaacaaaacatacaggaacagtttaagacattacatcgatcattagagttttgcttactatttcctatttgaattat |
49691392 |
T |
|
| Q |
101 |
tgttatgcaggaagggtagaagtccagctcggaagctaggattggttttaggtgatgtacatactttaatgttcaatataactagtttgtgtgcatttgg |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49691393 |
tattatgcaggaagggtagaagtccagctcggaagctaggattggttttaggtgatgtacatactttaatgttcaatataactagtttgtgtgcatttgg |
49691492 |
T |
|
| Q |
201 |
gcatatatttatccttccctaccgtctttaacggcaggctatgattgaaagcagcatgaaactcaaacatg |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49691493 |
gcatatatttatccttccctaccgtctttaacggcaggctatgattgaaagcagcatgaaactcaaacatg |
49691563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 315 - 509
Target Start/End: Original strand, 49691608 - 49691802
Alignment:
| Q |
315 |
gaagttgaacaaaaacttaaatatgcaagttcttgtcaattgtcatactaaaagtcattacaatctactgttaaaggagtcggtgttggaccatggatca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49691608 |
gaagttgaacaaaaacttaaatatgcaagttcttgtcaattgtcatactaaaagtcattacaatctactgttaaaggagtcggtgttggaccatggatca |
49691707 |
T |
|
| Q |
415 |
tagttggattattcctcgcgctacggcactacaaacgaaaatctggccctgcacagatccaatcccaaccaagcaacaacacttatgttgatcct |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49691708 |
tagttggattattcctcgcgctacggcactacaaacgaaaatctggccctgcacagacccaatcccaaccaagcaacaacacttatgttgatcct |
49691802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 49680376 - 49680479
Alignment:
| Q |
103 |
ttatgcaggaagggtagaagtccagctcggaagctaggattggttttaggtgatgtacatactttaatgttcaatataactagtttgtgtgcatttgggc |
202 |
Q |
| |
|
|||||||||| |||||||||| || || |||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
49680376 |
ttatgcaggaggggtagaagttcaacttggaagctaatattggttttaggtgatgtacaaactttaatattcaatacaactagtttgtgtgcatttgggt |
49680475 |
T |
|
| Q |
203 |
atat |
206 |
Q |
| |
|
|||| |
|
|
| T |
49680476 |
atat |
49680479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 49679661 - 49679753
Alignment:
| Q |
9 |
cgcaaggtaatacattaacaaaacatacagaaacagtttaagacattacatggatcattagagttttgcttactatttcctatttgaattattg |
102 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||| |||| || |||||||||||||||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
49679661 |
cgcaaggtaatgcgttaacaaaacttacagaaaca-tttacgatattacatggatcattagaattttgctaactacttcctatttgaattattg |
49679753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University