View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9496_low_5 (Length: 510)
Name: NF9496_low_5
Description: NF9496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9496_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 38830727 - 38831219
Alignment:
| Q |
1 |
cacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctttcttaacacgaggatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38830727 |
cacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctttcttaacacgaggatat |
38830826 |
T |
|
| Q |
101 |
agggctatccttaacttctctgagcatgttgtgaaggagtctcttcaaaacatgaattttaatacattgttaaatcgtggttgctcacctttattggaac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |
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| T |
38830827 |
agggctatccttaacttctctgagcatgttgtgaaggagtctcttcaaaacatgaattttaagacattgttaaatcaaggttgctcacctttattagaac |
38830926 |
T |
|
| Q |
201 |
taaaaaggatgcatgtgttgagaacaaggtctaagaaccctagtaaaaagggaaaaagggattccaagagcattgtgttgaacaatgctcaaaatgtgtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38830927 |
taaaaaggatgcatgtgttgagaacaaggtctaagaaccctagtaaaaagggaaaaagggattccaagagcatggtgttgaacaatgctcaaaatgtgtt |
38831026 |
T |
|
| Q |
301 |
ggtgttggaagatttgggttctgaatatctagaacaacttttgatgagttccgtttcccttgaaggtgttggaaatcatcaagtctttatacaaagctaa |
400 |
Q |
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| T |
38831027 |
ggtgttggaagatttgggttctgaatatctagagcaacttttgatgagttctgtttcccttgaaggtgttggaaatcatcaagtctttatacaaagctaa |
38831126 |
T |
|
| Q |
401 |
caactcaaacaaatttcatttgtttttattctttaagttgtttcattgaacaattcattcattttaagttgtataaatatgcaaatttcttgt |
493 |
Q |
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| T |
38831127 |
caactcaaacaaattacatttgtttttattctttaagttgtttcattgaacaattcattcattttaagttgtataaacatgcaaatttcttgt |
38831219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 38862450 - 38862531
Alignment:
| Q |
3 |
caacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagcttt |
84 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||||| || || || ||||||||||||||||||||||| ||||||||||| |
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| T |
38862450 |
caacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagcttt |
38862531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 30623969 - 30623874
Alignment:
| Q |
3 |
caacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctttcttaacacgaggat |
98 |
Q |
| |
|
|||||||||| |||||| | || |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||| |||||| |
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| T |
30623969 |
caacaagaaaaggtgttagagtttggattggtacatttgatacagctgaagctgctgctttagcttatgatcaagcagctttatcaacaagaggat |
30623874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 30629600 - 30629505
Alignment:
| Q |
3 |
caacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctttcttaacacgaggat |
98 |
Q |
| |
|
|||| |||||||||||| | || |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||||| |
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| T |
30629600 |
caactagaaatggtgttagagtttggattggtacatttgatacagctgaagcagcagctttagcttatgatcaagcagctttatcaacaagaggat |
30629505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 30629298 - 30629260
Alignment:
| Q |
290 |
caaaatgtgttggtgttggaagatttgggttctgaatat |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30629298 |
caaaatgtgttggtgttggaagatttgggttctgaatat |
30629260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 30623667 - 30623629
Alignment:
| Q |
290 |
caaaatgtgttggtgttggaagatttgggttctgaatat |
328 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
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|
| T |
30623667 |
caaaatgtgttggtgttggaagatttaggttctgaatat |
30623629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 30689781 - 30689733
Alignment:
| Q |
30 |
ttggaacatttgatacagctgaagcagctgctttagcttatgaccaagc |
78 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| ||||| |
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|
| T |
30689781 |
ttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagc |
30689733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 30718824 - 30718776
Alignment:
| Q |
30 |
ttggaacatttgatacagctgaagcagctgctttagcttatgaccaagc |
78 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| ||||| |
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|
| T |
30718824 |
ttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagc |
30718776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 4420197 - 4420155
Alignment:
| Q |
30 |
ttggaacatttgatacagctgaagcagctgctttagcttatga |
72 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||| |
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| T |
4420197 |
ttggtacatttgatacagctgaacaagctgctttagcttatga |
4420155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 19719694 - 19719641
Alignment:
| Q |
291 |
aaaatgtgttggtgttggaagatttgggttctgaatatctagaacaacttttga |
344 |
Q |
| |
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|||||||||| ||||| |||||||||||| |||||||||| || ||||| |||| |
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| T |
19719694 |
aaaatgtgtttgtgtttgaagatttgggtgctgaatatcttgagcaactattga |
19719641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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