View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9496_low_7 (Length: 478)
Name: NF9496_low_7
Description: NF9496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9496_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 40221959 - 40222415
Alignment:
| Q |
7 |
cataggacttactcatgttctagtataccaagtgagtgagaaaatttagttctcttgatgatttccgcgatgtccaagtttcgacgcaactcgtcaccac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221959 |
cataggacttactcatgttctagtataccaagtgagtgagaaaatttagttctcttgatgatttccgcgatgtccaagtttcgacgcaactcgtcaccac |
40222058 |
T |
|
| Q |
107 |
atttctctccagaggccaagtgagtgcaaacgaagcagaatgtggtatggtacaatctcatgctaatagatatcgaaccctgttagcataaaacacaaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40222059 |
atttctctccagaggccaagtgagtgcaaacgaagcagaatgtggtttggtacaatctcatgctaatagatatcgaaccctgttagcataaaccacaaat |
40222158 |
T |
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| Q |
207 |
ttataaaaatgtaagcaatgaatcataatcataccactgtatccagtacatagtcctacttcatcttgaaatctcacatttccatagcaaaatctgaagc |
306 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40222159 |
ttacaaaaatgtaagcaatgaatcataatcataccactgtagccagtacatagtcctacttcatcttgaaatgtcacatttccatagcaaaatctgaagc |
40222258 |
T |
|
| Q |
307 |
aacagctaattaattagaaccattttatag-ccccctcatatataattgtactggacatgcgcatattgaaccacatatatgacatcaacgtgtaattta |
405 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40222259 |
aatagctaattaattagaaccattttatagcccccctcatatataattgtacataacacgcgcatattgaaccacatatatgacatcaacgtgtaatttc |
40222358 |
T |
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| Q |
406 |
ttttatactatcaatcaatcataatcgtcagatcatttgacttttaacgaaccttat |
462 |
Q |
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| T |
40222359 |
ttttatactatcaatcaatcataatcgtcagatcatttgacttttaacgaaccttat |
40222415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 39338417 - 39338380
Alignment:
| Q |
405 |
attttatactatcaatcaatcataatcgtcagatcatt |
442 |
Q |
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|||||||||||||||||||| |||||||||| |||||| |
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| T |
39338417 |
attttatactatcaatcaattataatcgtcaaatcatt |
39338380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 442
Target Start/End: Complemental strand, 4076111 - 4076069
Alignment:
| Q |
400 |
aatttattttatactatcaatcaatcataatcgtcagatcatt |
442 |
Q |
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||||| ||||| |||||||||||||||||||||| |||||||| |
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| T |
4076111 |
aattttttttacactatcaatcaatcataatcgttagatcatt |
4076069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 442
Target Start/End: Original strand, 36886013 - 36886051
Alignment:
| Q |
404 |
tattttatactatcaatcaatcataatcgtcagatcatt |
442 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| |
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| T |
36886013 |
tattttacactatcaatcaatcataatcgtcaggtcatt |
36886051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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