View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9497_low_2 (Length: 411)

Name: NF9497_low_2
Description: NF9497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9497_low_2
NF9497_low_2
[»] chr2 (2 HSPs)
chr2 (1-411)||(37766357-37766767)
chr2 (4-61)||(37799329-37799386)
[»] chr4 (3 HSPs)
chr4 (351-396)||(54414858-54414903)
chr4 (366-411)||(2980572-2980617)
chr4 (360-396)||(4191657-4191693)
[»] chr5 (2 HSPs)
chr5 (360-396)||(26516216-26516252)
chr5 (364-396)||(20982251-20982283)
[»] chr3 (2 HSPs)
chr3 (360-396)||(28842973-28843009)
chr3 (364-396)||(41028967-41028999)
[»] chr8 (1 HSPs)
chr8 (360-396)||(31875675-31875711)
[»] chr6 (2 HSPs)
chr6 (360-396)||(3217306-3217342)
chr6 (364-396)||(29249396-29249428)
[»] chr1 (1 HSPs)
chr1 (360-388)||(870963-870991)


Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 37766357 - 37766767
Alignment:
Q  1 tgggtcaggtagttcaaattcttgagggaattttggaagtgaatttgccaccaattccaaggtctcttcaaatgttcgttgataacgatgagaacgtggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37766357 tgggtcaggtagttcaaattcttgagggaattttggaagtgaatttgccaccaattccaaggtctcttcaaatgttcgttgataacgatgagaacgtggt 37766456  T
Q  101 tttctacactgattctagctcgactcaaagttcacaggtaaagagtaacgtctcagcaacctctcaagtccaaagcaatatctcatctagctccaagtct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37766457 tttctacactgattctagctcgactcaaagttcacaggtaaagagtaacgtctcagcaacctctcaagtccaaagcaatatctcatctagctccaagtct 37766556  T
Q  201 tcagcagaaaattaggttgtttctattgttatttgttgctcatacaaaaaacaaaatgtcatcctttgattttaacaaatgtaattgtaaatttgcaatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37766557 tcagcagaaaattaggttgtttctattgttatttgttgctcatacaaaaaacaaaatgccatcctttgattttaacaaatgtaattgtaaatttgcaatg 37766656  T
Q  301 tatggtttgaattaagcgattcagtttggatacacacttcagtcaagcacttatgctacaagcgcttatcatataagtgcttatgtattagctattcata 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37766657 tatggtttgaattaagcgattcagtttggatacacacttcagtcaagcacttatgctacaagggcttatcatataagtgcttatgtattagctattcata 37766756  T
Q  401 ttacaaaaaat 411  Q
    | |||||||||    
T  37766757 tgacaaaaaat 37766767  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 37799386 - 37799329
Alignment:
Q  4 gtcaggtagttcaaattcttgagggaattttggaagtgaatttgccaccaattccaag 61  Q
    |||||| |||||||||||| ||||| |  ||| | |||||||||||||||||||||||    
T  37799386 gtcaggcagttcaaattctcgaggggaccttgaatgtgaatttgccaccaattccaag 37799329  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 54414858 - 54414903
Alignment:
Q  351 ttatgctacaagcgcttatcatataagtgcttatgtattagctatt 396  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||    
T  54414858 ttatgttataagcgcttatcatataagtgcttatgtataagctatt 54414903  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 2980617 - 2980572
Alignment:
Q  366 ttatcatataagtgcttatgtattagctattcatattacaaaaaat 411  Q
    ||||||||||||||||||||||| |||||||  ||| |||||||||    
T  2980617 ttatcatataagtgcttatgtataagctatttctataacaaaaaat 2980572  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 4191657 - 4191693
Alignment:
Q  360 aagcgcttatcatataagtgcttatgtattagctatt 396  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  4191657 aagcgtttatcatataagtgcttatgtataagctatt 4191693  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 26516216 - 26516252
Alignment:
Q  360 aagcgcttatcatataagtgcttatgtattagctatt 396  Q
    ||||||||||||||||||||||||||||| |||||||    
T  26516216 aagcgcttatcatataagtgcttatgtataagctatt 26516252  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 20982283 - 20982251
Alignment:
Q  364 gcttatcatataagtgcttatgtattagctatt 396  Q
    ||||||||||||||||||||||||| |||||||    
T  20982283 gcttatcatataagtgcttatgtataagctatt 20982251  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 28843009 - 28842973
Alignment:
Q  360 aagcgcttatcatataagtgcttatgtattagctatt 396  Q
    ||||||||||||||||||||||||||||| |||||||    
T  28843009 aagcgcttatcatataagtgcttatgtataagctatt 28842973  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 41028999 - 41028967
Alignment:
Q  364 gcttatcatataagtgcttatgtattagctatt 396  Q
    ||||||||||||||||||||||||| |||||||    
T  41028999 gcttatcatataagtgcttatgtataagctatt 41028967  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 31875711 - 31875675
Alignment:
Q  360 aagcgcttatcatataagtgcttatgtattagctatt 396  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  31875711 aagcgcttatcatataagtgcttatctataagctatt 31875675  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 3217342 - 3217306
Alignment:
Q  360 aagcgcttatcatataagtgcttatgtattagctatt 396  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  3217342 aagcgattatcatataagtgcttatgtataagctatt 3217306  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Original strand, 29249396 - 29249428
Alignment:
Q  364 gcttatcatataagtgcttatgtattagctatt 396  Q
    ||||||||||||||||||||||||| |||||||    
T  29249396 gcttatcatataagtgcttatgtatcagctatt 29249428  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 388
Target Start/End: Original strand, 870963 - 870991
Alignment:
Q  360 aagcgcttatcatataagtgcttatgtat 388  Q
    |||||||||||||||||||||||||||||    
T  870963 aagcgcttatcatataagtgcttatgtat 870991  T

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