View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9497_low_3 (Length: 411)
Name: NF9497_low_3
Description: NF9497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9497_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 41920234 - 41919982
Alignment:
| Q |
19 |
gctgttggtaacggtaggccttgaaagtactcggcagttcatttttaacctgtattcaaaataaatacctaaaatcagtgaccaattaataatataaact |
118 |
Q |
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| T |
41920234 |
gctgttggtaacggtaggccttgaaagtactcggcagttcatttttaacctgtattcaaaataaatacctaaaatcagtgaccaattaataatataaact |
41920135 |
T |
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| Q |
119 |
caatccatttcatatatttatttgttatagcattctannnnnnnncttttcaaatcaatactttaacaacaaaacctgaatcatggttcaactgttttaa |
218 |
Q |
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| T |
41920134 |
caatccatttcatatatttatttgttatagcattctattttttttcttttcaaatcaatactttaacaacaaaacctgaatcatggttcaactgttttaa |
41920035 |
T |
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| Q |
219 |
accgcttaaacatgataaagattcaattgaaacatttaaataaccgaacctta |
271 |
Q |
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| T |
41920034 |
accgcttaaacatgataaagattcaattgaaccatttaaataaccgaacctta |
41919982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 264 - 401
Target Start/End: Complemental strand, 41919952 - 41919815
Alignment:
| Q |
264 |
gaaccttatgattcggttccttttttaaaacatctttaattatgaatattttaaaaatccaagattgaattattgagtttgaaataattatgaaagtgga |
363 |
Q |
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| T |
41919952 |
gaaccatatgattcggttcgttttttaaaacatctttaattatgaatattttaaaaatccaagattgaattattgagtttgaaataattatgaaagtgga |
41919853 |
T |
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| Q |
364 |
ccttcaagtttgacaagtataagaacttccatcctttg |
401 |
Q |
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| T |
41919852 |
ccttcaagtttgacaagtataagaacttccaccctttg |
41919815 |
T |
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