View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9497_low_4 (Length: 402)
Name: NF9497_low_4
Description: NF9497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9497_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 217 - 383
Target Start/End: Complemental strand, 6524681 - 6524512
Alignment:
| Q |
217 |
tggtcacaaacttctacagcttcaaacctgtagaagttattgtc--aagtaagttctgctgccatctttttt-ggccctccaccatgaggtctttcacaa |
313 |
Q |
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| T |
6524681 |
tggtcacaaacttctacagcttcaaacctgtagaagttattattgtaagtaagttctgctgccatctttttttggccctccaccatgaggtctttcacaa |
6524582 |
T |
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| Q |
314 |
ttcttatatcagtgttattggttgccttagagacagttttgaatccattctgatgaggtagccagttatc |
383 |
Q |
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| T |
6524581 |
ttctgatatcaatgttattggttggcttagagacagttttgaatccattctgatgaggtagccagttatc |
6524512 |
T |
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Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 29322032 - 29321939
Alignment:
| Q |
98 |
aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc |
192 |
Q |
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| T |
29322032 |
aaattataaaatgtgtgaaattact-aaatgcccataccacatcagcagtggtagaaaggggtgtatagaaagagtggtttgtgtatctttttcc |
29321939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 14106850 - 14106892
Alignment:
| Q |
98 |
aaattataaaatgtgtgaaattactgaaatgctcataccacat |
140 |
Q |
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| T |
14106850 |
aaattataaaatgtgtgaaattactaaaatgcccataccacat |
14106892 |
T |
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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 22362823 - 22362729
Alignment:
| Q |
98 |
aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc |
192 |
Q |
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| T |
22362823 |
aaattataaaatgtgtgaaattacgaaaatgcccataccacatcattagtggtacaaaatggtgtatagaaagagtggtctatgtatctttttcc |
22362729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 1493978 - 1494072
Alignment:
| Q |
98 |
aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc |
192 |
Q |
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| T |
1493978 |
aaattataaaatgtgtgaaactactaaaatgcccataccacatcatcagtggtacaaaagggtgtatagaaagagtggtttgtgtatctttttcc |
1494072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 12105402 - 12105459
Alignment:
| Q |
135 |
ccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc |
192 |
Q |
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| T |
12105402 |
ccacatcagcagtggtataaaagggtgtaccaaaagggtggtctatgtatctttttcc |
12105459 |
T |
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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 17641475 - 17641381
Alignment:
| Q |
98 |
aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc |
192 |
Q |
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| T |
17641475 |
aaattataaaatgtgtgaaattactaaaatgcccataccacattattagtggtgcaaaggggtgtatagaaagagtggtctatgtatctttttcc |
17641381 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 27008429 - 27008523
Alignment:
| Q |
98 |
aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc |
192 |
Q |
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|||||||||||||||||||| |||| |||||| |||||||||| | |||||||| |||||||||||||||| | ||||| | ||||||||||||| |
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| T |
27008429 |
aaattataaaatgtgtgaaactactaaaatgcccataccacatcatcagtggtacaaaagggtgtatagaaagagtggtttgtgtatctttttcc |
27008523 |
T |
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