View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9497_low_5 (Length: 340)
Name: NF9497_low_5
Description: NF9497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9497_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 40693719 - 40693412
Alignment:
| Q |
16 |
gttagttgaaccgaaccttacatacatatattgctcaaagatttaataaagtaaatatttattttcttctaaataacaatagatattcaaatatcttgtt |
115 |
Q |
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| T |
40693719 |
gttaattgaaccgaaccttacatacatatattgctcaaagatttaataaagtaaatatttattttcttctaaataacaatagatattcaaatatcttgtt |
40693620 |
T |
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| Q |
116 |
cataattcatgaaagtgatgattcagtcctatttaagatcttatatttcatggaataaatgtgtgttgagctggcatcggtgtccaatcttggttcacat |
215 |
Q |
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| T |
40693619 |
cataattcatgaaagtgatgattcagtcctatttaagatcttatatttcatggaataaatgtgtgttgagctggcatcggtgtccaatcttggttcacat |
40693520 |
T |
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| Q |
216 |
attctcactatgctacacacacactcttctgtgtgcccaaaatatatcaccatcttgccctacttctttgtactacctacttattctctttctcttttat |
315 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40693519 |
attctcactatgctacac--acactcttctgtgtgcccaaaatatatcaccatcttgccctacttctttgtactacctacttattctctttctcttttat |
40693422 |
T |
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| Q |
316 |
tggttctgtg |
325 |
Q |
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|||||||||| |
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| T |
40693421 |
tggttctgtg |
40693412 |
T |
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