View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9497_low_6 (Length: 334)

Name: NF9497_low_6
Description: NF9497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9497_low_6
NF9497_low_6
[»] chr1 (11 HSPs)
chr1 (1-315)||(29854985-29855288)
chr1 (73-184)||(3739813-3739925)
chr1 (65-184)||(3739805-3739925)
chr1 (80-184)||(19758276-19758382)
chr1 (73-151)||(19758304-19758382)
chr1 (70-120)||(29855122-29855172)
chr1 (65-151)||(47543590-47543676)
chr1 (80-145)||(3694026-3694091)
chr1 (62-95)||(43656287-43656320)
chr1 (75-151)||(6061493-6061569)
chr1 (65-184)||(37918905-37919025)
[»] chr5 (15 HSPs)
chr5 (79-177)||(39030568-39030667)
chr5 (79-184)||(15119302-15119408)
chr5 (80-184)||(39030562-39030667)
chr5 (65-173)||(2424429-2424538)
chr5 (76-131)||(26730107-26730162)
chr5 (75-179)||(42324884-42324989)
chr5 (67-131)||(9956551-9956615)
chr5 (80-184)||(19644398-19644502)
chr5 (64-131)||(34252707-34252774)
chr5 (113-178)||(2884067-2884133)
chr5 (105-151)||(28023956-28024002)
chr5 (80-177)||(33669933-33670031)
chr5 (80-150)||(38958067-38958137)
chr5 (80-148)||(14646398-14646466)
chr5 (99-131)||(40138825-40138857)
[»] chr2 (17 HSPs)
chr2 (80-184)||(31469077-31469182)
chr2 (80-184)||(31469070-31469175)
chr2 (80-184)||(38935369-38935474)
chr2 (64-177)||(944777-944891)
chr2 (74-131)||(7932743-7932800)
chr2 (65-177)||(10459272-10459385)
chr2 (80-187)||(11386303-11386413)
chr2 (68-151)||(41374562-41374645)
chr2 (80-151)||(43398871-43398942)
chr2 (80-184)||(10459272-10459377)
chr2 (102-153)||(37104881-37104932)
chr2 (66-120)||(2949034-2949088)
chr2 (80-177)||(16180441-16180539)
chr2 (135-184)||(17437187-17437237)
chr2 (91-183)||(7932743-7932836)
chr2 (73-189)||(24037583-24037700)
chr2 (64-120)||(14781910-14781966)
[»] chr3 (5 HSPs)
chr3 (62-184)||(46829048-46829164)
chr3 (66-184)||(32221469-32221588)
chr3 (73-183)||(46829048-46829152)
chr3 (74-123)||(11256586-11256635)
chr3 (102-178)||(22756880-22756956)
[»] chr7 (6 HSPs)
chr7 (84-177)||(16866407-16866501)
chr7 (79-123)||(27147602-27147646)
chr7 (80-151)||(5026146-5026217)
chr7 (155-184)||(1554917-1554946)
chr7 (107-182)||(5026141-5026217)
chr7 (135-182)||(6803308-6803356)
[»] chr6 (12 HSPs)
chr6 (83-166)||(2282415-2282499)
chr6 (73-145)||(8437813-8437885)
chr6 (80-155)||(28004652-28004727)
chr6 (73-151)||(35003758-35003836)
chr6 (65-184)||(9675753-9675866)
chr6 (80-182)||(31323820-31323923)
chr6 (74-184)||(33822287-33822398)
chr6 (80-177)||(31323820-31323918)
chr6 (79-124)||(7549780-7549825)
chr6 (58-95)||(30766318-30766355)
chr6 (138-181)||(7549777-7549821)
chr6 (102-130)||(29004192-29004220)
[»] chr4 (10 HSPs)
chr4 (73-177)||(12276819-12276924)
chr4 (80-189)||(12276814-12276924)
chr4 (65-131)||(55762917-55762983)
chr4 (81-145)||(54235261-54235325)
chr4 (138-184)||(55762928-55762975)
chr4 (102-155)||(41615714-41615767)
chr4 (80-176)||(54235228-54235325)
chr4 (80-120)||(2871562-2871602)
chr4 (73-121)||(48514598-48514646)
chr4 (80-128)||(55827297-55827345)
[»] scaffold2113 (1 HSPs)
scaffold2113 (80-184)||(576-680)
[»] chr8 (7 HSPs)
chr8 (73-151)||(8777768-8777846)
chr8 (80-184)||(35901041-35901146)
chr8 (73-177)||(35901041-35901146)
chr8 (76-182)||(33557777-33557884)
chr8 (100-184)||(8777768-8777853)
chr8 (138-177)||(7974850-7974890)
chr8 (75-151)||(9548082-9548158)
[»] scaffold0067 (1 HSPs)
scaffold0067 (80-184)||(35939-36044)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 29854985 - 29855288
Alignment:
Q  1 gccaagagaggtgaagaaagatagagtggtcacatacattgaaaatgtgggccattataatttatactcccaccgtcttaaaatataagcaaaaattagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||| ||||||| |    
T  29854985 gccaagagaggtgaagaaagatagagtggtcacatacattgaaaatgtgggccattataatttatactcccacaatcccaaaatataagcgaaaattaat 29855084  T
Q  101 taacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatattttaggacggtggaatagtaacttc 199  Q
     |||||||||||||||||||| ||||||||| |||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||    
T  29855085 caacaaaagttgatgtatttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatattttaggacggtggagtagtaacttc 29855184  T
Q  200 tagaaattgattctctgaagtaattatctcaannnnnnncaattgttcattttaaaagtatccattcgataactcctctattattttgagaaatgacaat 299  Q
    ||||||||||||||| ||| ||||||||||||       ||||||||||||||||||||            |||||||||||||||||||||||||||||    
T  29855185 tagaaattgattctcggaaataattatctcaatttttttcaattgttcattttaaaagt------------actcctctattattttgagaaatgacaat 29855272  T
Q  300 gtatgatagaacatct 315  Q
    ||||||||||||||||    
T  29855273 gtatgatagaacatct 29855288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 3739925 - 3739813
Alignment:
Q  73 ccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgttta 171  Q
    ||||| ||||||||||||||||||| || |||||||||| ||||||||| ||||||||| |||| ||||||||||||||| | ||||||||||||| |||    
T  3739925 ccgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgctta 3739826  T
Q  172 tattttaggacgg 184  Q
    |||||| ||||||    
T  3739825 tattttgggacgg 3739813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 3739805 - 3739925
Alignment:
Q  65 tactcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgt-gaccaatt 163  Q
    ||||||| |||||  |||||||||||||||||| || ||| |||||| ||||||||| |  ||| ||   || |||||||||||||||||| ||||||||    
T  3739805 tactccctccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatt 3739904  T
Q  164 tttgtttatattttaggacgg 184  Q
    |||| ||||||||||||||||    
T  3739905 tttgcttatattttaggacgg 3739925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 19758276 - 19758382
Alignment:
Q  80 aaaatataagcaaaaattagt-taacaaaagttgatgtatttgattaaaaattagta-ctaaatacattaacttttg-tgaccaatttttgtttatattt 176  Q
    ||||| ||||||||||| ||| ||||  ||||||||||||||| | | ||||||  | ||||||||||||||||||| ||||||||||||  ||||||||    
T  19758276 aaaatgtaagcaaaaatgagtataacgtaagttgatgtatttggt-acaaattataaactaaatacattaacttttgttgaccaatttttacttatattt 19758374  T
Q  177 taggacgg 184  Q
    || |||||    
T  19758375 tatgacgg 19758382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 19758382 - 19758304
Alignment:
Q  73 ccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactt 151  Q
    ||||| ||||||||||| ||||||| || |||||||||| ||||||||  || | |||| |||| |||||||| |||||    
T  19758382 ccgtcataaaatataagtaaaaattggtcaacaaaagttaatgtatttagtttataatttgtaccaaatacatcaactt 19758304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 29855172 - 29855122
Alignment:
Q  70 ccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtattt 120  Q
    |||||||| |||||||||||||||||||  | |||||||||| ||||||||    
T  29855172 ccaccgtcctaaaatataagcaaaaattgatcaacaaaagttaatgtattt 29855122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 47543590 - 47543676
Alignment:
Q  65 tactcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactt 151  Q
    ||||||| | ||||||||||||||  ||||||| || ||||||| || ||| ||||| || |||||| |||| |||||||| |||||    
T  47543590 tactccctctgtcttaaaatataataaaaaattggtcaacaaaaattaatgaatttggttcaaaatttgtaccaaatacatcaactt 47543676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 3694091 - 3694026
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacat 145  Q
    |||||||||| | ||||| || ||||||| || |||||||||||| |||||| ||| |||||||||    
T  3694091 aaaatataagtagaaattggtcaacaaaaattaatgtatttgattcaaaatttgtattaaatacat 3694026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 43656320 - 43656287
Alignment:
Q  62 ttatactcccaccgtcttaaaatataagcaaaaa 95  Q
    |||||||||| |||||||||||||||||||||||    
T  43656320 ttatactccctccgtcttaaaatataagcaaaaa 43656287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 6061569 - 6061493
Alignment:
Q  75 gtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactt 151  Q
    |||| ||||| | |||||| ||| || ||||||| || ||||||||| || |||||| |||||| ||||||||||||    
T  6061569 gtctcaaaatgtgagcaaatattggtcaacaaaaattaatgtatttgttttaaaatttgtactagatacattaactt 6061493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 37918905 - 37919025
Alignment:
Q  65 tactcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatt 163  Q
    |||||||| ||||  ||||| ||||||||||| | | |||| |||||||||||||||||  ||| ||   || ||||||||| ||||||| |||| ||||    
T  37918905 tactcccatcgtcccaaaatgtaagcaaaaatgaatcaacataagttgatgtatttgatataaattttaaaccaaatacattcacttttgttgacaaatt 37919004  T
Q  164 tttgtttatattttaggacgg 184  Q
    || | ||||| |||| |||||    
T  37919005 ttcgcttatagtttaagacgg 37919025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 39030568 - 39030667
Alignment:
Q  79 taaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatatttt 177  Q
    ||||||||||||||||||| || |||||||||| ||||||||| ||||||||| |||| ||||||||||||||||| |||| |||||||| |||||||||    
T  39030568 taaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatatttt 39030667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 15119302 - 15119408
Alignment:
Q  79 taaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactt-ttgtgaccaatttttgtttatatttt 177  Q
    |||||||||||||||||||||| || |||| || |||||||||||| |||||| ||| |||||| |||||||| |  | |||||||||||||||||||||    
T  15119302 taaaatataagcaaaaattagtcaataaaacttaatgtatttgattcaaaatttgtattaaatatattaacttatattaaccaatttttgtttatatttt 15119401  T
Q  178 aggacgg 184  Q
    || ||||    
T  15119402 agaacgg 15119408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 39030667 - 39030562
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatatttta 178  Q
    ||||||||||||||||||||| |||||||||| ||||||||| |  ||| ||   || ||||||||||||||||| ||||||||||||| ||||||||||    
T  39030667 aaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatatttta 39030568  T
Q  179 ggacgg 184  Q
    | ||||    
T  39030567 gaacgg 39030562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 2424429 - 2424538
Alignment:
Q  65 tactcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgt-gaccaatt 163  Q
    ||||||| ||||  ||||||||||||||||||| ||||||| ||| |||||||| || |  ||| || | || |||||||||||||||| | ||||||||    
T  2424429 tactccctccgtgctaaaatataagcaaaaatttgttaacataagctgatgtatatggtacaaattttgaaccaaatacattaacttttatcgaccaatt 2424528  T
Q  164 tttgtttata 173  Q
    ||||||||||    
T  2424529 tttgtttata 2424538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 26730162 - 26730107
Alignment:
Q  76 tcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaatt 131  Q
    ||||||||||||   ||||||| ||||||||||||| |||||||||||||||||||    
T  26730162 tcttaaaatatagataaaaattggttaacaaaagttaatgtatttgattaaaaatt 26730107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 42324989 - 42324884
Alignment:
Q  75 gtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgt-gaccaatttttgtttata 173  Q
    |||| |||||||||| ||||||| || |||||||||| ||||||||| || ||||||  ||| |||||||| || || | | ||||||||||  ||||||    
T  42324989 gtctcaaaatataagtaaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaatacatcaatttatattgaccaattttaatttata 42324890  T
Q  174 ttttag 179  Q
    ||||||    
T  42324889 ttttag 42324884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 9956615 - 9956551
Alignment:
Q  67 ctcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaatt 131  Q
    ||||| |||||  ||||| |||| ||||||| ||||||||||||| |||||||||||| ||||||    
T  9956615 ctccctccgtcccaaaatgtaagtaaaaattggttaacaaaagttaatgtatttgattcaaaatt 9956551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 19644502 - 19644398
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgtgaccaatttttgtttatattttag 179  Q
    |||||||||| || ||||  | ||||||| || | ||||||| || ||||||  |||||||||||| ||||| ||| |   |||||||||||||||||||    
T  19644502 aaaatataagtaagaattgatcaacaaaaattaacgtatttggttcaaaatttatactaaatacatcaacttatgtaaattatttttgtttatattttag 19644403  T
Q  180 gacgg 184  Q
    |||||    
T  19644402 gacgg 19644398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 34252707 - 34252774
Alignment:
Q  64 atactcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaatt 131  Q
    |||||||| |||||  ||||| |||||||||||| || |||||||||| ||||||||| || ||||||    
T  34252707 atactccctccgtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatt 34252774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 2884067 - 2884133
Alignment:
Q  113 atgtatttgattaaaaattagtactaaatacattaactttt-gtgaccaatttttgtttatatttta 178  Q
    |||||||||||| |||||| ||| |||||||||||| ||||  ||||||||||||  ||||||||||    
T  2884067 atgtatttgatttaaaatttgtattaaatacattaaattttattgaccaatttttacttatatttta 2884133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 28024002 - 28023956
Alignment:
Q  105 aaaagttgatgtatttgattaaaaattagtactaaatacattaactt 151  Q
    ||||||| |||||||||||| |||||| |||| ||||||||||||||    
T  28024002 aaaagttaatgtatttgattcaaaatttgtacaaaatacattaactt 28023956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 33670031 - 33669933
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatatttt 177  Q
    ||||| |||||||||||| || || ||||||| ||||||||| || |||||| |||| | ||||| |||||| || ||||| ||||||| ||| |||||    
T  33670031 aaaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgcttacatttt 33669933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 38958067 - 38958137
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaact 150  Q
    |||||||||| |||||||  |||||||||||| ||||||||| || ||| || |||| |||||||| ||||    
T  38958067 aaaatataagtaaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaatacatcaact 38958137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 14646466 - 14646398
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaa 148  Q
    ||||||||||| ||||||  | || |||| || |||||| ||||| |||||| ||||||||||||||||    
T  14646466 aaaatataagcgaaaattgataaataaaaattaatgtatatgattcaaaatttgtactaaatacattaa 14646398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 40138825 - 40138857
Alignment:
Q  99 gttaacaaaagttgatgtatttgattaaaaatt 131  Q
    ||||| |||||||||||||||||||||||||||    
T  40138825 gttaataaaagttgatgtatttgattaaaaatt 40138857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 31469077 - 31469182
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatatttta 178  Q
    |||||||||||||||||| || |||||||||| ||||||||| ||||||||| |||  ||||||||||||||| | ||||||||||||| |||||||||     
T  31469077 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgcttatattttg 31469176  T
Q  179 ggacgg 184  Q
    ||||||    
T  31469177 ggacgg 31469182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 31469175 - 31469070
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatatttta 178  Q
    |||||||||||||||||| || ||| |||||| |||||||||||  ||| ||   || ||||||||||||||||| ||||||||||||| |||||||||     
T  31469175 aaaatataagcaaaaattggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttg 31469076  T
Q  179 ggacgg 184  Q
    ||||||    
T  31469075 ggacgg 31469070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 38935369 - 38935474
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatatttta 178  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||  | | || | || ||||||||||||||||| |||  ||||||||||||||||||     
T  38935369 aaaatataagcaaaaatgagtcaacataagttgatgtatttgatacagattttgaacaaaatacattaacttttgttgagtaatttttgtttatattttt 38935468  T
Q  179 ggacgg 184  Q
    ||||||    
T  38935469 ggacgg 38935474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 944891 - 944777
Alignment:
Q  64 atactcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactttt-gtgaccaat 162  Q
    |||||||| |||||| ||||| |||| |||||||||| |||| ||||||||||||||| |  ||| || | |||||||||||||||||||  ||| | ||    
T  944891 atactccctccgtctcaaaatgtaagtaaaaattagtcaacataagttgatgtatttggtacaaattttgaactaaatacattaacttttattgatcgat 944792  T
Q  163 ttttgtttatatttt 177  Q
    ||||| |||||||||    
T  944791 ttttgcttatatttt 944777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 7932743 - 7932800
Alignment:
Q  74 cgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaatt 131  Q
    ||||||||||||||||||||||||||| |||||||||| | ||||||| || ||||||    
T  7932743 cgtcttaaaatataagcaaaaattagtcaacaaaagttaacgtatttggttcaaaatt 7932800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 10459385 - 10459272
Alignment:
Q  65 tactcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatt 163  Q
    ||||||| |||||  ||||| |||||||| ||| || |||| ||||||||| || ||||  ||| || | || ||||||||||||||||| |||||||||    
T  10459385 tactccctccgtcccaaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatt 10459286  T
Q  164 tttgtttatatttt 177  Q
    |||| |||||||||    
T  10459285 tttgcttatatttt 10459272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 11386413 - 11386303
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtt--tatattt 176  Q
    ||||||||||||||| ||  | |||| |||||||||||||||||  ||| || | | |||||| ||||| ||||| ||| |||||||||||  |||||||    
T  11386413 aaaatataagcaaaatttgatcaacataagttgatgtatttgatacaaattttgaattaaatatattaatttttgttgatcaatttttgtttatatattt 11386314  T
Q  177 taggacggtgg 187  Q
    |||||||||||    
T  11386313 taggacggtgg 11386303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 41374645 - 41374562
Alignment:
Q  68 tcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactt 151  Q
    |||| |||||| |||||||||| |||||||||| ||| |||||| |||||||||||| ||| ||  ||| |||||||| |||||    
T  41374645 tccctccgtctcaaaatataagtaaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaactt 41374562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 43398942 - 43398871
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactt 151  Q
    ||||| ||| |||||||| ||||||||||||| ||||||||| || |||||| |||| |||||||| |||||    
T  43398942 aaaatctaaacaaaaatttgttaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaactt 43398871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 10459272 - 10459377
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatatttta 178  Q
    |||||||||||||||||| || |||||||||| ||||||||| || |||||| |||  | || ||| ||||| || |||||||| |||| ||| |||||     
T  10459272 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacattttg 10459371  T
Q  179 ggacgg 184  Q
    ||||||    
T  10459372 ggacgg 10459377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 37104881 - 37104932
Alignment:
Q  102 aacaaaagttgatgtatttgattaaaaattagtactaaatacattaactttt 153  Q
    ||||||| ||||||||||||||||| |||| | || ||||||||||||||||    
T  37104881 aacaaaaattgatgtatttgattaagaatttgaaccaaatacattaactttt 37104932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 2949034 - 2949088
Alignment:
Q  66 actcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtattt 120  Q
    |||||| |||||| ||||| |||||||||||| ||||||||||| | ||||||||    
T  2949034 actccctccgtctcaaaatgtaagcaaaaattggttaacaaaagctaatgtattt 2949088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 16180441 - 16180539
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatatttt 177  Q
    ||||| ||||||||||||||| |||| || ||||||||||  ||  ||| || | || ||||||||||||||||| ||||||| ||||  |||||||||    
T  16180441 aaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaacttttgttgaccaaattttacttatatttt 16180539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 17437187 - 17437237
Alignment:
Q  135 actaaatacattaacttttgt-gaccaatttttgtttatattttaggacgg 184  Q
    |||||||||||||| |||||| ||| |||||||||||||||||| ||||||    
T  17437187 actaaatacattaatttttgttgacaaatttttgtttatattttgggacgg 17437237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 7932836 - 7932743
Alignment:
Q  91 aaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatattttaggacg 183  Q
    |||||| ||| |||| |||||||||||| ||||  ||| || | || |||||| |||||||||| |||| |||||||| |||||||||| ||||    
T  7932836 aaaaatgagtcaacataagttgatgtatctgatataaattttgaaccaaatacgttaacttttgttgactaatttttgcttatattttaagacg 7932743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 24037583 - 24037700
Alignment:
Q  73 ccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgt-gaccaatttttgttta 171  Q
    ||||| |||||| ||||||||||| ||| |||| |||||||| |||||| |  ||| || | || |||||||| ||||| ||| |||| ||||||| |||    
T  24037583 ccgtcctaaaatgtaagcaaaaatgagtcaacataagttgatatatttggtacaaattttgaacaaaatacatcaacttatgtcgacccatttttgctta 24037682  T
Q  172 tattttaggacggtggaa 189  Q
      ||||||||||| ||||    
T  24037683 ctttttaggacggaggaa 24037700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 14781910 - 14781966
Alignment:
Q  64 atactcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtattt 120  Q
    |||||| ||||||| ||||||||||| |||||||  ||||| |||||| ||||||||    
T  14781910 atactctcaccgtcctaaaatataagtaaaaattgattaacgaaagttaatgtattt 14781966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 46829164 - 46829048
Alignment:
Q  62 ttatactcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgacca 160  Q
    ||||||||||  |||| ||||||||||||||||||| || |||||||||| ||||||||||| ||       ||| ||||||||| ||||||| ||||||    
T  46829164 ttatactcccttcgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttgataaa-------taccaaatacattgacttttgttgacca 46829072  T
Q  161 atttttgtttatattttaggacgg 184  Q
    ||||||| ||||||||||||||||    
T  46829071 atttttgcttatattttaggacgg 46829048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 32221588 - 32221469
Alignment:
Q  66 actcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaattt 164  Q
    |||||| |||| | ||||| ||||||||||||||| |||||||||| ||||||||| || |||||| |||| |||||||| || || || ||| ||||||    
T  32221588 actccctccgtatcaaaatgtaagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaattt 32221489  T
Q  165 ttgtttatattttaggacgg 184  Q
    ||| ||| ||||| ||||||    
T  32221488 ttgcttacattttgggacgg 32221469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 46829048 - 46829152
Alignment:
Q  73 ccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgt-gaccaatttttgttta 171  Q
    ||||| ||||||||||||||||||| || |||||||||  ||||||||| |     |||  ||  |||||||||||||||||| |||||||||||| |||    
T  46829048 ccgtcctaaaatataagcaaaaattggtcaacaaaagtcaatgtatttggt-----att--tatcaaatacattaacttttgttgaccaatttttgctta 46829140  T
Q  172 tattttaggacg 183  Q
    ||||||||||||    
T  46829141 tattttaggacg 46829152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 11256635 - 11256586
Alignment:
Q  74 cgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgat 123  Q
    ||||| ||||||||||||||||| | |||||| | |||||||||||||||    
T  11256635 cgtctcaaaatataagcaaaaatgaattaacatatgttgatgtatttgat 11256586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 22756956 - 22756880
Alignment:
Q  102 aacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgtgaccaatttttgtttatatttta 178  Q
    |||||||||| | |||||||||| ||||||  ||| ||||||||  | || |||||||||||||  |||||||||||    
T  22756956 aacaaaagttaacgtatttgattcaaaatttataccaaatacatcgatttatgtgaccaattttattttatatttta 22756880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 16866501 - 16866407
Alignment:
Q  84 tataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactttt-gtgaccaatttttgtttatatttt 177  Q
    |||||||||||||| || |||||||||| ||||||||| ||||||||| ||||  |||||||||||||||  ||| ||||||||| |||||||||    
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatatttt 16866407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 27147602 - 27147646
Alignment:
Q  79 taaaatataagcaaaaattagttaacaaaagttgatgtatttgat 123  Q
    ||||||||||| |||||||||| |||||||||| |||||||||||    
T  27147602 taaaatataagtaaaaattagtcaacaaaagttaatgtatttgat 27147646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 5026146 - 5026217
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactt 151  Q
    |||||||||||||||||| ||||||||||||| || |||||  |  |||||| |||| |||||||| |||||    
T  5026146 aaaatataagcaaaaattggttaacaaaagttaatatatttagtccaaaatttgtaccaaatacatcaactt 5026217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 184
Target Start/End: Original strand, 1554917 - 1554946
Alignment:
Q  155 tgaccaatttttgtttatattttaggacgg 184  Q
    ||||||||||||||||||||||||||||||    
T  1554917 tgaccaatttttgtttatattttaggacgg 1554946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 5026217 - 5026141
Alignment:
Q  107 aagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatattttaggac 182  Q
    ||||||||||||||| |  ||| || | |||||||| ||||||||||| | ||||||||||| ||||||||| ||||    
T  5026217 aagttgatgtatttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatattttgggac 5026141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 6803356 - 6803308
Alignment:
Q  135 actaaatacattaacttttg-tgaccaatttttgtttatattttaggac 182  Q
    |||||||||||||||||||| ||||||| ||||| ||||||||| ||||    
T  6803356 actaaatacattaacttttgttgaccaaattttgcttatattttgggac 6803308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 2282499 - 2282415
Alignment:
Q  83 atataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaattttt 166  Q
    ||||||||||||||||||||||| || ||||||||||||||  ||  || | |||||||||||||||||||| ||||||||||||    
T  2282499 atataagcaaaaattagttaacataaattgatgtatttgatacaatttttgaactaaatacattaacttttgttgaccaattttt 2282415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 8437885 - 8437813
Alignment:
Q  73 ccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacat 145  Q
    |||||| |||||||||| |||| ||||| ||||||| || |||||||||||| |||||| |||| ||||||||    
T  8437885 ccgtctcaaaatataagtaaaatttagtcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacat 8437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 28004727 - 28004652
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgt 155  Q
    ||||||||||  ||||||||| |||||||||| |||||||||  | |||||| |||| ||||||||||| ||||||    
T  28004727 aaaatataagggaaaattagtcaacaaaagttaatgtatttggctcaaaatttgtaccaaatacattaatttttgt 28004652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 35003758 - 35003836
Alignment:
Q  73 ccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactt 151  Q
    ||||| ||||||||||| ||||||| ||||| |||| || |||||||||||| |||||| |||| ||||| || |||||    
T  35003758 ccgtcctaaaatataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttgtacaaaatatatcaactt 35003836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 9675753 - 9675866
Alignment:
Q  65 tactcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgtgaccaattt 164  Q
    ||||||| |||||| ||||| |||||||||||| || |||| ||||||||| || || |  ||| || ||| |||||||||||||||      |||||||    
T  9675753 tactccctccgtctcaaaatgtaagcaaaaattggtcaacataagttgatgcatctggtacaaattttgtattaaatacattaactt------ccaattt 9675846  T
Q  165 ttgtttatattttaggacgg 184  Q
    ||  ||||||||||||||||    
T  9675847 ttacttatattttaggacgg 9675866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 31323820 - 31323923
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatatttta 178  Q
    ||||| |||||||||||| || |||||||||| ||||||||  || |||||| |||| | |||||| ||||| || ||||| ||||||| ||| |||||     
T  31323820 aaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacattttg 31323919  T
Q  179 ggac 182  Q
    ||||    
T  31323920 ggac 31323923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 33822398 - 33822287
Alignment:
Q  74 cgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttat 172  Q
    ||||| ||||| |||| ||||||   |||| | |||||||||||||||||  ||| || | |||||||| ||||||||||| | | |||||||| ||||     
T  33822398 cgtctcaaaatgtaagtaaaaatggattaatataagttgatgtatttgatacaaattttgaactaaatatattaacttttgttaatcaatttttatttac 33822299  T
Q  173 attttaggacgg 184  Q
    ||||||||||||    
T  33822298 attttaggacgg 33822287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 31323918 - 31323820
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatatttt 177  Q
    ||||| |||||||||||  || |||| |||||||||||| || |  ||| || | || ||||||||||||||||| ||||||||||||| ||| |||||    
T  31323918 aaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttttgcttacatttt 31323820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 7549780 - 7549825
Alignment:
Q  79 taaaatataagcaaaaattagttaacaaaagttgatgtatttgatt 124  Q
    ||||||||||||||||||| ||  ||||||||| ||||||||||||    
T  7549780 taaaatataagcaaaaattggtgtacaaaagttaatgtatttgatt 7549825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 30766318 - 30766355
Alignment:
Q  58 taatttatactcccaccgtcttaaaatataagcaaaaa 95  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  30766318 taattaatactccctccgtcttaaaatataagcaaaaa 30766355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 7549821 - 7549777
Alignment:
Q  138 aaatacattaacttttgtg-accaatttttgtttatattttagga 181  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||    
T  7549821 aaatacattaacttttgtacaccaatttttgcttatattttagga 7549777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 29004192 - 29004220
Alignment:
Q  102 aacaaaagttgatgtatttgattaaaaat 130  Q
    |||||||||||||||||||||||||||||    
T  29004192 aacaaaagttgatgtatttgattaaaaat 29004220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 12276819 - 12276924
Alignment:
Q  73 ccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgttta 171  Q
    ||||| ||||||||||| ||| ||| || | |||||||| |||||||||||| ||||||  |||||||||||| ||||| || ||||| ||||||| |||    
T  12276819 ccgtcctaaaatataagtaaagattggtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgctta 12276918  T
Q  172 tatttt 177  Q
    ||||||    
T  12276919 tatttt 12276924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 12276924 - 12276814
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatatttta 178  Q
    |||||||||||||||||  || |||| ||||||||||||||  |  ||| || | |  ||||||||||||||||| |||||||| |||  ||||||||||    
T  12276924 aaaatataagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttgctgaccaatctttacttatatttta 12276825  T
Q  179 ggacggtggaa 189  Q
    |||||| ||||    
T  12276824 ggacggaggaa 12276814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 55762983 - 55762917
Alignment:
Q  65 tactcccaccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaatt 131  Q
    ||||||| |||||  ||||||||| |||||||| || |||||||||| || ||||||||||||||||    
T  55762983 tactccctccgtcccaaaatataaacaaaaattggtcaacaaaagttaatatatttgattaaaaatt 55762917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 54235325 - 54235261
Alignment:
Q  81 aaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacat 145  Q
    |||||||| ||||||||  | |||||||||| ||||||||| || |||||| |||||||||||||    
T  54235325 aaatataaacaaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacat 54235261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 55762928 - 55762975
Alignment:
Q  138 aaatacattaacttttgt-gaccaatttttgtttatattttaggacgg 184  Q
    ||||| |||||||||||| |||||||||||||||||||||| ||||||    
T  55762928 aaatatattaacttttgttgaccaatttttgtttatattttgggacgg 55762975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 41615714 - 41615767
Alignment:
Q  102 aacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgt 155  Q
    |||||||||||||||||||  ||||||||||   | ||||||||||||||||||    
T  41615714 aacaaaagttgatgtatttagttaaaaattaagtccaaatacattaacttttgt 41615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 54235228 - 54235325
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatattt 176  Q
    ||||| ||||||||||| ||| || | || |||||||||||  |  ||| || | || ||||||||||||||||| ||| ||||||||||||||||||    
T  54235228 aaaatgtaagcaaaaatgagtcaatataaattgatgtatttagtacaaattttgaaccaaatacattaacttttgttgagcaatttttgtttatattt 54235325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 2871602 - 2871562
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtattt 120  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  2871602 aaaatataagcaaaaatcggtaaacaaaagttgatgtattt 2871562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 48514646 - 48514598
Alignment:
Q  73 ccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttg 121  Q
    |||||| | ||||||| ||||||||||| |||||||||| |||||||||    
T  48514646 ccgtctcacaatataaacaaaaattagtcaacaaaagttaatgtatttg 48514598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 55827345 - 55827297
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaa 128  Q
    |||||||||||||||||| || |||||||||| || |||||| ||||||    
T  55827345 aaaatataagcaaaaattggtcaacaaaagttaatatatttggttaaaa 55827297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 680 - 576
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgtgaccaatttttgtttatattttag 179  Q
    ||||||||||  ||||||||| ||||||||||  |||||||  || |||||| |||| ||||| |||||||||||| ||||| ||||| ||||| ||| |    
T  680 aaaatataagtgaaaattagtcaacaaaagttattgtatttagttcaaaatttgtaccaaataaattaacttttgttaccaaattttgcttatactttgg 581  T
Q  180 gacgg 184  Q
    |||||    
T  580 gacgg 576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 8777768 - 8777846
Alignment:
Q  73 ccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactt 151  Q
    |||||||||||||||| ||||||||  | |||||||||| || |||||| || ||||||  || |||||||||||||||    
T  8777768 ccgtcttaaaatataaacaaaaattgatcaacaaaagttaatatatttggttcaaaatttatattaaatacattaactt 8777846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 35901041 - 35901146
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgt-gaccaatttttgtttatatttta 178  Q
    ||||||||||||||||| ||| |||| ||||||||||| ||  |  ||| || |  |  ||||||||||||||||| |||| ||||||| ||||||||||    
T  35901041 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgagcccaatacattaacttttgttgacctatttttgcttatatttta 35901140  T
Q  179 ggacgg 184  Q
    ||||||    
T  35901141 ggacgg 35901146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 35901146 - 35901041
Alignment:
Q  73 ccgtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgttta 171  Q
    ||||| ||||||||||||||||||  || |||||||||| ||||||| |  | |||||| ||||||| ||||| ||||| || ||||  ||||||| |||    
T  35901146 ccgtcctaaaatataagcaaaaataggtcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgactcatttttgctta 35901047  T
Q  172 tatttt 177  Q
    ||||||    
T  35901046 tatttt 35901041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 33557777 - 33557884
Alignment:
Q  76 tcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactttt-gtgaccaatttttgtttatat 174  Q
    ||||||||| |||||||||| |  | |||| ||||| |||||||||||  ||| || | |||||||||||||||||||  ||| ||||||||  |||| |    
T  33557777 tcttaaaatgtaagcaaaaaatgatcaacataagtttatgtatttgatacaaattttgaactaaatacattaacttttattgatcaatttttacttatgt 33557876  T
Q  175 tttaggac 182  Q
    ||||||||    
T  33557877 tttaggac 33557884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 8777853 - 8777768
Alignment:
Q  100 ttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttgt-gaccaatttttgtttatattttaggacgg 184  Q
    |||||| ||||| |||||||| ||  ||| || | || ||||| |||||||||||| || |||||||||||||||||||| |||||    
T  8777853 ttaacataagttaatgtatttaatataaattttgaaccaaatatattaacttttgttgatcaatttttgtttatattttaagacgg 8777768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 7974850 - 7974890
Alignment:
Q  138 aaatacattaacttttgt-gaccaatttttgtttatatttt 177  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  7974850 aaatacattaacttttattgaccaatttttgtttatatttt 7974890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 9548158 - 9548082
Alignment:
Q  75 gtcttaaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaactt 151  Q
    |||||||||||||| ||||||||  | ||||||| ||  | |||||| || |||||| ||||||||||||| |||||    
T  9548158 gtcttaaaatataaacaaaaattgttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaactt 9548082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 36044 - 35939
Alignment:
Q  80 aaaatataagcaaaaattagttaacaaaagttgatgtatttgattaaaaattagtactaaatacattaacttttg-tgaccaatttttgtttatatttta 178  Q
    ||||| ||| ||||||| ||| || | || ||||||||||||||  ||| || |||| ||||||||||||  ||| ||| |||||||| |||||||||||    
T  36044 aaaatgtaaacaaaaatgagtcaatataaattgatgtatttgatacaaattttgtaccaaatacattaacggttgttgatcaatttttatttatatttta 35945  T
Q  179 ggacgg 184  Q
     |||||    
T  35944 agacgg 35939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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