View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9497_low_7 (Length: 328)
Name: NF9497_low_7
Description: NF9497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9497_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 19722842 - 19722521
Alignment:
| Q |
4 |
acgtctaacaaaaacaattaatcacatgttaatgtgattttattaggcacatatcaatatatgattctctttctataaataaaaaattcgtgtgactttt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
19722842 |
acgtctaacaaaaacaattaatcacatgttaatgtgattttattaggcacatgttaatatatgattctctttctataaatagaaaatttgtgtgactttt |
19722743 |
T |
|
| Q |
104 |
gtagagnnnnnnnn-tactgtgatgtttttgctaaaaaa--ggacacatggcattgaagttgttagaggattttagattgacatgtggattattcatttt |
200 |
Q |
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| T |
19722742 |
gtagaaagaaaaaaatactgtgatgtttttgctaaaaaaaaggacacatggcattgaagttgttagaggattttagattgacatgtggaatattcatttt |
19722643 |
T |
|
| Q |
201 |
gaacatttgtatttgtatgaatagaggatgatgattatagaaatcaattaaacttcttaaattatttccttttgctacatttagaatctcatagctacta |
300 |
Q |
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| T |
19722642 |
gaacatttgcacttgtatgaatagaggatgatgattatagaaatcaattaaactttttaaattattttcttttgctacatttggaatctcatagctacta |
19722543 |
T |
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| Q |
301 |
tgaaaaaattcataacaccaaa |
322 |
Q |
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| T |
19722542 |
tgaaaaaattcataacaccaaa |
19722521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 22732020 - 22731961
Alignment:
| Q |
227 |
gatgatgattatagaaatcaattaaacttcttaaattatttccttttgctacatttagaa |
286 |
Q |
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||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||| |
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| T |
22732020 |
gatgatgattatagaaatcaattaaacattttaaattattgccttttgctacatttagaa |
22731961 |
T |
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