View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9498_1 (Length: 988)

Name: NF9498_1
Description: NF9498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9498_1
NF9498_1
[»] chr7 (13 HSPs)
chr7 (118-482)||(28402966-28403317)
chr7 (149-342)||(28586539-28586734)
chr7 (706-894)||(28403488-28403685)
chr7 (891-982)||(28403707-28403798)
chr7 (891-982)||(28585998-28586089)
chr7 (520-680)||(28403310-28403472)
chr7 (520-680)||(28586300-28586461)
chr7 (753-894)||(28586111-28586261)
chr7 (420-482)||(28586454-28586516)
chr7 (922-966)||(8047370-8047415)
chr7 (30-76)||(1977709-1977755)
chr7 (30-75)||(24725504-24725549)
chr7 (34-75)||(24990098-24990139)
[»] chr2 (2 HSPs)
chr2 (32-76)||(31023282-31023326)
chr2 (30-75)||(31238004-31238049)
[»] chr8 (3 HSPs)
chr8 (30-75)||(3094280-3094325)
chr8 (30-76)||(17647050-17647096)
chr8 (31-76)||(23142233-23142278)
[»] chr1 (3 HSPs)
chr1 (31-75)||(23528714-23528758)
chr1 (32-74)||(13100250-13100292)
chr1 (30-75)||(41032697-41032742)
[»] chr3 (2 HSPs)
chr3 (31-73)||(17796435-17796477)
chr3 (31-73)||(19104875-19104917)
[»] chr4 (1 HSPs)
chr4 (30-75)||(9770169-9770214)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-136; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 118 - 482
Target Start/End: Original strand, 28402966 - 28403317
Alignment:
Q  118 tagagtatgggtagtgtattagaaaaagtaggagtgctaatatgaagggcttggaattaatgaaaggtccaacacaaggctataaaaaagccgctatttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28402966 tagagtatgggtagtgtattagaaaaagtaggagtgctaatatgaattgcttggaattaatgaaaggtccaacacaaggctataaaaa-gccgctatttc 28403064  T
Q  218 atagattcttctaagaaaattctaaaatcttgcttgagtttcaacttggtgtgtctatgttcttctgattctgaatgctaagagaaagagctaatcacaa 317  Q
    |||||||||||||||||||||| |||| |||   ||        |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28403065 atagattcttctaagaaaattcaaaaaactt---tg--------cttg-tgtgtctatgttcttctgattctgaatgctaagagaaagagctaatcacaa 28403152  T
Q  318 tcacaaggttatgatgctttcattcnnnnnnnnnnnnngttgatgagttttccaatcatggttaaaatttcaaaaccgtttcttttattgaaatttataa 417  Q
    |||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28403153 tcacaaggttatgatgctttcattctttttggttttttgttgatgagttttccaatcatggttaaaatttcaaaaccgtttcttttattgaaatttataa 28403252  T
Q  418 tcttttccaatcatggttcttgtggctcaagattcaactctactgtgttagaatttatttctgtt 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28403253 tcttttccaatcatggttcttgtggctcaagattcaactctactgtgttagtatttatttctgtt 28403317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 149 - 342
Target Start/End: Complemental strand, 28586734 - 28586539
Alignment:
Q  149 gagtgctaatatgaagggcttggaattaatgaaaggtccaacacaaggctataaaaaa--gccgctatttcatagattcttctaagaaaattctaaaatc 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  28586734 gagtgctaatatgaagggcttggaattaatgaaaggtccaacacaaggctataaaaagccgccgctatttcatagattcttctaagaaaattctaaaatc 28586635  T
Q  247 ttgcttgagtttcaacttggtgtgtctatgttcttctgattctgaatgctaagagaaagagctaatcacaatcacaaggttatgatgctttcattc 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28586634 ttgcttgagtttcaacttggtgtgtctatgttcttctgattctgaatgctaagagaaagagctgatcacaatcacaaggttatgatgctttcattc 28586539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 706 - 894
Target Start/End: Original strand, 28403488 - 28403685
Alignment:
Q  706 atgtactcccttttgtataattaatatgtttcctttgatctttatgttctaaggtcatagtttattccattttattctcagaacaattattt-------- 797  Q
    ||||||||||||||||||||| |||||||||||| |||| || ||| |||||||| ||||| ||||||||||||||||||||||||||||||            
T  28403488 atgtactcccttttgtataataaatatgtttcctgtgatattgatgctctaaggttatagtctattccattttattctcagaacaattatttaatattca 28403587  T
Q  798 atactcaataagataattacagttttttatctgaacca-gtgtgtatattaaagaacttgtgacagttgattttgacatatgttgcattgtattcatg 894  Q
    ||| |||||| |||||||||||||||| ||||||||||  |||||||||||||||||||||||  |||| ||||| ||||||||| |||| |||||||    
T  28403588 ataatcaatatgataattacagtttttgatctgaaccatttgtgtatattaaagaacttgtgatggttggttttgtcatatgttgtattgcattcatg 28403685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 891 - 982
Target Start/End: Original strand, 28403707 - 28403798
Alignment:
Q  891 catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatg 982  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28403707 catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatg 28403798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 891 - 982
Target Start/End: Complemental strand, 28586089 - 28585998
Alignment:
Q  891 catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatg 982  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28586089 catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatg 28585998  T

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Target: chr7; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 520 - 680
Target Start/End: Original strand, 28403310 - 28403472
Alignment:
Q  520 tttcttttagtccaaactcatcacaaacagaacttcttgatcatcagaaatgactcaatatttg--tttgatttgtaagaaatggtttatacattgctag 617  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |   |||||| ||||||||||| ||||| ||||   |     
T  28403310 tttctgttagcccaaactcatcacaaacagaatttcttgatcatcagaaatgactcaatatattcatttgatctgtaagaaatgatttatgcattttgat 28403409  T
Q  618 ctaacaatgagatgagattttaattgtgaatccttgaaagaatgaatcttcttgttcttgata 680  Q
      |   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28403410 aaatttatgagatgagattttgattgtgaatccttgaaagaatgaatcttcttgttcttgata 28403472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 520 - 680
Target Start/End: Complemental strand, 28586461 - 28586300
Alignment:
Q  520 tttcttttagtccaaactcatcacaaacagaacttcttgatcatcagaaatgactca--atatttgtttgatttgtaagaaatggtttatacattgctag 617  Q
    ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||  |||||  |||||| ||||||||||| ||||| ||||| ||     
T  28586461 tttctgttagcccaaactcatcacaaacagaatttcttgatcatcagaaatgactcaatatattcatttgatctgtaagaaatgatttatgcattgata- 28586363  T
Q  618 ctaacaatgagatgaga-ttttaattgtgaatccttgaaagaatgaatcttcttgttcttgata 680  Q
      |   ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  28586362 -aatttatgagatgagatttttgattgtgaatccttgaaagaatgaatcttcttgttcttgata 28586300  T

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Target: chr7; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 753 - 894
Target Start/End: Complemental strand, 28586261 - 28586111
Alignment:
Q  753 tctaaggtcatagtttattccattttattctcagaacaattattta--------tactcaataagataattacagttttttatctgaaccagt-gtgtat 843  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||        || |||||| || ||||||||||||| |||||||||| | ||||||    
T  28586261 tctaaggttatagtctattccattttattctcagaacaattatttaatattcaataatcaatatgacaattacagtttttgatctgaaccatttgtgtat 28586162  T
Q  844 attaaagaacttgtgacagttgattttgacatatgttgcattgtattcatg 894  Q
    ||||||||||||||||  |||| ||||| ||||||||| |||| |||||||    
T  28586161 attaaagaacttgtgatggttggttttgtcatatgttgtattgcattcatg 28586111  T

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Target: chr7; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 28586516 - 28586454
Alignment:
Q  420 ttttccaatcatggttcttgtggctcaagattcaactctactgtgttagaatttatttctgtt 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28586516 ttttccaatcatggttcttgtggctcaagattcaactctactgtgttagtatttatttctgtt 28586454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 922 - 966
Target Start/End: Complemental strand, 8047415 - 8047370
Alignment:
Q  922 gagctacgtatgatataagaactaggattaaagacat-tgttaaaa 966  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  8047415 gagctacatatgatataagaactaggattaaagacatatgttaaaa 8047370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 1977709 - 1977755
Alignment:
Q  30 ccttcaacaactcaaattcatagtagaatcctgaaataggcaaaatt 76  Q
    |||||||| |||||||| |||||||||||||| ||||| ||||||||    
T  1977709 ccttcaacgactcaaatccatagtagaatcctaaaatatgcaaaatt 1977755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 24725549 - 24725504
Alignment:
Q  30 ccttcaacaactcaaattcatagtagaatcctgaaataggcaaaat 75  Q
    ||||||||||||||||| ||||||||||||   |||||||||||||    
T  24725549 ccttcaacaactcaaatccatagtagaatcgcaaaataggcaaaat 24725504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 24990139 - 24990098
Alignment:
Q  34 caacaactcaaattcatagtagaatcctgaaataggcaaaat 75  Q
    |||| |||||||| |||||||||||||| |||||||||||||    
T  24990139 caacgactcaaatccatagtagaatcctaaaataggcaaaat 24990098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 31023282 - 31023326
Alignment:
Q  32 ttcaacaactcaaattcatagtagaatcctgaaataggcaaaatt 76  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||    
T  31023282 ttcaacgactcaaattcatagtagaatcctaaaataggcaaaatt 31023326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 31238049 - 31238004
Alignment:
Q  30 ccttcaacaactcaaattcatagtagaatcctgaaataggcaaaat 75  Q
    |||||||| ||||||||||||||||||||| | ||||||| |||||    
T  31238049 ccttcaacgactcaaattcatagtagaatcttaaaataggaaaaat 31238004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 3094325 - 3094280
Alignment:
Q  30 ccttcaacaactcaaattcatagtagaatcctgaaataggcaaaat 75  Q
    |||||||| |||||||| |||||||||||||| |||||||||||||    
T  3094325 ccttcaacgactcaaatccatagtagaatcctaaaataggcaaaat 3094280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 17647050 - 17647096
Alignment:
Q  30 ccttcaacaactcaaattcatagtagaatcctgaaataggcaaaatt 76  Q
    |||||||| ||||||||||||||||||||||  ||||||| ||||||    
T  17647050 ccttcaacgactcaaattcatagtagaatcccaaaataggaaaaatt 17647096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 23142233 - 23142278
Alignment:
Q  31 cttcaacaactcaaattcatagtagaatcctgaaataggcaaaatt 76  Q
    ||||||| ||| |||| |||||||||||||| ||||||||||||||    
T  23142233 cttcaacgactgaaatccatagtagaatcctaaaataggcaaaatt 23142278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 23528714 - 23528758
Alignment:
Q  31 cttcaacaactcaaattcatagtagaatcctgaaataggcaaaat 75  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||    
T  23528714 cttcaacgactcaaatccatagtagaatcctaaaataggcaaaat 23528758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 13100250 - 13100292
Alignment:
Q  32 ttcaacaactcaaattcatagtagaatcctgaaataggcaaaa 74  Q
    |||||| |||||||| |||||||||||||| ||||||||||||    
T  13100250 ttcaacgactcaaatccatagtagaatcctaaaataggcaaaa 13100292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 41032742 - 41032697
Alignment:
Q  30 ccttcaacaactcaaattcatagtagaatcctgaaataggcaaaat 75  Q
    |||||||| |||||||| ||||||||||| || |||||||||||||    
T  41032742 ccttcaacgactcaaatccatagtagaattctaaaataggcaaaat 41032697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 17796435 - 17796477
Alignment:
Q  31 cttcaacaactcaaattcatagtagaatcctgaaataggcaaa 73  Q
    |||||||||||||||||||||| |||||||| |||||| ||||    
T  17796435 cttcaacaactcaaattcatagcagaatcctaaaatagacaaa 17796477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 19104875 - 19104917
Alignment:
Q  31 cttcaacaactcaaattcatagtagaatcctgaaataggcaaa 73  Q
    |||||||||||||||||||||| |||||||| |||||| ||||    
T  19104875 cttcaacaactcaaattcatagcagaatcctaaaatagacaaa 19104917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 9770169 - 9770214
Alignment:
Q  30 ccttcaacaactcaaattcatagtagaatcctgaaataggcaaaat 75  Q
    |||||||| |||||||| |||||||||||||| |||||| ||||||    
T  9770169 ccttcaacgactcaaatccatagtagaatcctaaaatagacaaaat 9770214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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