View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9498_12 (Length: 325)
Name: NF9498_12
Description: NF9498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9498_12 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 149 - 325
Target Start/End: Complemental strand, 798298 - 798122
Alignment:
| Q |
149 |
ataacacaattggacacttattgttggtatagttgtttgactactgtttgcacgaggcaaaacactagaaagtcagatgctttaattgtgttcaattagt |
248 |
Q |
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| T |
798298 |
ataacacaattggacacttattgttggtatagttgtttgactactgtttacacgtggcaaaacaccagaaagtcagatgctttaattgtgttcaattagt |
798199 |
T |
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| Q |
249 |
cgatagtcagatgcttggcaagaaattaactaaatggcaactcatggtatattgtagcagagtatttatgtactctc |
325 |
Q |
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| T |
798198 |
cgatagtcagatgcttggcaagaaattaactaaatggcaactcgtggtatattgtagcagagtatttatgtactctc |
798122 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 798440 - 798356
Alignment:
| Q |
11 |
cagagagaacatgtatatatttgtctctattttgtaaattttgctaggcaagcctaagtc----atctagcgagccaaacttaac |
91 |
Q |
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| T |
798440 |
cagagagaacatgtatatatttgtctctattttgtaaattttgctaggcaagcctaagtcatcgatctagcgagccaaacttaac |
798356 |
T |
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