View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9498_2 (Length: 828)

Name: NF9498_2
Description: NF9498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9498_2
NF9498_2
[»] chr1 (22 HSPs)
chr1 (14-806)||(44091891-44092680)
chr1 (625-761)||(37850579-37850716)
chr1 (671-783)||(10351180-10351292)
chr1 (678-788)||(17294592-17294702)
chr1 (689-788)||(3550735-3550834)
chr1 (655-802)||(66099-66245)
chr1 (647-788)||(3875333-3875474)
chr1 (684-788)||(24600353-24600457)
chr1 (680-780)||(32594751-32594851)
chr1 (689-788)||(11977295-11977394)
chr1 (625-781)||(31767139-31767297)
chr1 (678-788)||(34364940-34365050)
chr1 (667-781)||(39066222-39066336)
chr1 (689-762)||(29798240-29798313)
chr1 (697-788)||(34649453-34649544)
chr1 (725-788)||(41184505-41184568)
chr1 (685-788)||(44290498-44290601)
chr1 (689-788)||(50052067-50052166)
chr1 (726-788)||(22077576-22077638)
chr1 (689-759)||(44043816-44043886)
chr1 (689-778)||(26661942-26662031)
chr1 (689-762)||(41157032-41157105)
[»] chr3 (18 HSPs)
chr3 (655-788)||(39914267-39914400)
chr3 (656-780)||(54017827-54017951)
chr3 (680-781)||(12114597-12114698)
chr3 (689-788)||(43346835-43346934)
chr3 (656-788)||(29644592-29644724)
chr3 (728-788)||(33175747-33175807)
chr3 (682-788)||(8327919-8328025)
chr3 (680-788)||(47964553-47964661)
chr3 (664-780)||(47964934-47965050)
chr3 (725-788)||(7767394-7767457)
chr3 (689-788)||(15772869-15772968)
chr3 (689-788)||(29644946-29645045)
chr3 (726-788)||(21832424-21832486)
chr3 (730-788)||(36986033-36986091)
chr3 (730-788)||(37011472-37011530)
chr3 (689-779)||(54018242-54018332)
chr3 (727-788)||(25755409-25755470)
chr3 (689-762)||(32462602-32462675)
[»] chr5 (16 HSPs)
chr5 (681-804)||(13786037-13786159)
chr5 (689-788)||(41632797-41632896)
chr5 (689-788)||(9498698-9498797)
chr5 (685-788)||(12662692-12662795)
chr5 (689-780)||(25327958-25328049)
chr5 (681-788)||(26074182-26074289)
chr5 (689-780)||(42405640-42405731)
chr5 (646-788)||(1028518-1028660)
chr5 (694-788)||(18603169-18603263)
chr5 (726-788)||(31509638-31509700)
chr5 (726-788)||(31509746-31509808)
chr5 (646-788)||(41170649-41170791)
chr5 (681-762)||(26074653-26074734)
chr5 (726-769)||(25816431-25816474)
chr5 (689-788)||(33747786-33747885)
chr5 (681-788)||(35150022-35150128)
[»] chr7 (14 HSPs)
chr7 (689-781)||(45433263-45433355)
chr7 (647-788)||(34218036-34218177)
chr7 (656-788)||(7517595-7517727)
chr7 (646-788)||(1085617-1085759)
chr7 (680-788)||(30244285-30244393)
chr7 (646-788)||(45434651-45434793)
chr7 (689-781)||(23421-23513)
chr7 (646-781)||(11845213-11845348)
chr7 (689-788)||(14681525-14681624)
chr7 (689-781)||(19122753-19122845)
chr7 (694-802)||(22566711-22566818)
chr7 (689-761)||(36534828-36534900)
chr7 (625-788)||(47129110-47129274)
chr7 (742-788)||(10341847-10341893)
[»] chr4 (19 HSPs)
chr4 (678-788)||(28034244-28034354)
chr4 (634-788)||(39404413-39404567)
chr4 (656-781)||(54936218-54936342)
chr4 (680-788)||(15841401-15841509)
chr4 (680-788)||(50002441-50002549)
chr4 (689-788)||(45489374-45489472)
chr4 (720-774)||(31249931-31249985)
chr4 (682-788)||(54741213-54741319)
chr4 (689-802)||(50630797-50630909)
chr4 (656-789)||(54108927-54109059)
chr4 (680-788)||(4955350-4955458)
chr4 (685-788)||(3340822-3340925)
chr4 (685-788)||(3341143-3341246)
chr4 (646-781)||(22183263-22183398)
chr4 (645-788)||(36629252-36629395)
chr4 (681-788)||(41707499-41707605)
chr4 (723-788)||(43174521-43174587)
chr4 (691-788)||(1731691-1731788)
chr4 (669-762)||(22027983-22028076)
[»] chr6 (19 HSPs)
chr6 (689-781)||(8481948-8482040)
chr6 (646-781)||(10073992-10074127)
chr6 (656-781)||(10074374-10074499)
chr6 (631-788)||(12071675-12071834)
chr6 (689-781)||(16107700-16107792)
chr6 (689-788)||(1846763-1846862)
chr6 (685-788)||(2377769-2377872)
chr6 (689-788)||(3409274-3409373)
chr6 (647-769)||(10073618-10073740)
chr6 (689-786)||(16454592-16454689)
chr6 (689-786)||(16454924-16455021)
chr6 (684-788)||(593748-593852)
chr6 (680-788)||(32460615-32460723)
chr6 (744-788)||(33605669-33605713)
chr6 (689-788)||(29518518-29518617)
chr6 (689-788)||(29518935-29519034)
chr6 (689-788)||(32741194-32741293)
chr6 (689-762)||(2578487-2578560)
chr6 (691-788)||(35210219-35210316)
[»] chr2 (28 HSPs)
chr2 (689-788)||(15511539-15511638)
chr2 (680-788)||(29874058-29874166)
chr2 (689-788)||(5543042-5543141)
chr2 (690-788)||(962613-962711)
chr2 (646-780)||(42514672-42514806)
chr2 (726-787)||(28254193-28254254)
chr2 (680-781)||(33561486-33561587)
chr2 (646-781)||(36178172-36178307)
chr2 (689-788)||(36178649-36178748)
chr2 (647-781)||(33731670-33731804)
chr2 (695-781)||(33953821-33953907)
chr2 (726-787)||(29873618-29873679)
chr2 (723-788)||(40733532-40733597)
chr2 (728-788)||(7598624-7598684)
chr2 (684-788)||(28254276-28254380)
chr2 (680-788)||(30313193-30313300)
chr2 (664-788)||(33954281-33954404)
chr2 (689-788)||(40163416-40163516)
chr2 (680-788)||(40679664-40679772)
chr2 (724-788)||(41678446-41678510)
chr2 (689-788)||(6421400-6421499)
chr2 (656-787)||(6422126-6422257)
chr2 (726-788)||(1769907-1769969)
chr2 (646-732)||(6421802-6421888)
chr2 (678-788)||(28531347-28531457)
chr2 (698-788)||(38796673-38796763)
chr2 (689-762)||(5542669-5542742)
chr2 (691-788)||(37106203-37106300)
[»] scaffold0078 (1 HSPs)
scaffold0078 (689-781)||(5379-5471)
[»] chr8 (17 HSPs)
chr8 (689-781)||(20870617-20870709)
chr8 (656-788)||(30359624-30359756)
chr8 (689-788)||(3669702-3669801)
chr8 (685-787)||(8918804-8918906)
chr8 (695-788)||(40518597-40518690)
chr8 (680-788)||(45122092-45122200)
chr8 (689-762)||(9483231-9483304)
chr8 (736-780)||(4154371-4154415)
chr8 (690-781)||(43274824-43274915)
chr8 (689-788)||(45121954-45122053)
chr8 (694-788)||(3038339-3038433)
chr8 (742-788)||(4154763-4154809)
chr8 (746-788)||(20995502-20995544)
chr8 (680-761)||(27856173-27856254)
chr8 (680-781)||(37544525-37544626)
chr8 (689-762)||(40579550-40579623)
chr8 (726-787)||(44358151-44358212)
[»] scaffold0702 (1 HSPs)
scaffold0702 (685-788)||(554-657)
[»] scaffold0171 (1 HSPs)
scaffold0171 (725-788)||(17536-17599)


Alignment Details
Target: chr1 (Bit Score: 622; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 14 - 806
Target Start/End: Complemental strand, 44092680 - 44091891
Alignment:
Q  14 gatggacatcatcaatccaccccatgattcttttttgt-agcacccgccaactaaagacacatattttcaacggaaccaaagtattccaaagttgattag 112  Q
    |||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44092680 gatgaacatcattaatccaccccatgattcttttttgttagcacccgccaactaaagacacatattttcaacggaaccaaagtattccaaagttgattag 44092581  T
Q  113 ctcttaagtactgccaaaagatctttgtcaacgcctgccacaaaacattggttgattgattgnnnnnnnnnnnnnnnnnnntgacttaggtatgtgggac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||    
T  44092580 ctcttaagtactgccaaaagatctttgtcaacgcctgccacaaaacattggttgattgattgtactactact---------tgacttaggtatgtgggac 44092490  T
Q  213 ctctgcacggccatataagtatgcatttttctctagcaatttgcttaaataattttggtcgttggtcgacatatgtgacccagtgagtgcaagttgccac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  44092489 ctctgcacggccatataagtatgcatttttctctagcaatttgcttaaataattttggtcgctggtcgacatatgtgaccg-gtgagtgcaagttgccac 44092391  T
Q  313 tacgttcccgccagtatagcgtcatcttgtatgcattccaaaattcattttggactggatccatactatactagggatcgcaaattaattaattaattat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44092390 tacgttcccgccagtatagcgtcatcttgtatgcattccaaaattcattttggactggatccatactatactagggatcgcaaattaattaattaattat 44092291  T
Q  413 tcacaatagataagttatagacttatagtagtagtagta---attgtttgtttgtttgtaataagctgctgagtttcattcttgccaattcaacaagtac 509  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44092290 tcacaatagataagttatagacttatagtagtagtagtagtaattgtttgtttgtttgtaataagctgctgattttcattcttgccaattcaacaagtac 44092191  T
Q  510 taacaactaacaacctcaatctatcccctcattgaatgctttactcattaatgtttctttgcgtttcccaagtttaatcctatccgtaagctaaaataat 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44092190 taacaactaacaacctcaatctatcccctcattgaatgctttactcattaatgtttctttgcgtttcccaagtttaatcctatccataagctaaaataat 44092091  T
Q  610 ttattttgcttta---tggttggatcatgagggaagcttgggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatc 706  Q
    |||||||||||||   |||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||||||||| |    
T  44092090 ttattttgctttaaattggttggatcatgagggaagtttgggaccgtctacatcgaggccagaacaacaaaacaagtgagaaagacgccacactcttacc 44091991  T
Q  707 cacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacataattactcacgcttgtggg 806  Q
    ||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  44091990 cacaatcttaaaatattagatttatgggttctctcacttataaagtgttcaacctttacttttacatctgatgtgtgacataattactcacgcttgtggg 44091891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 625 - 761
Target Start/End: Original strand, 37850579 - 37850716
Alignment:
Q  625 gttggatcatgagggaagcttggg-accgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacatt 723  Q
    ||||||||||||||| |||| ||| |||||  ||||||| || ||| ||||   | |||||||| |||||||||||||||||||  || |||||||||||    
T  37850579 gttggatcatgaggggagctaggggaccgtccacatcgaggctagagcaaccgcacaagtgagagagacaccacactcttatccgaaaccttaaaacatt 37850678  T
Q  724 aggtttatgagttctctaacttataaagtgttcaacct 761  Q
    ||||||||| ||||||| |||||||| |||||||||||    
T  37850679 aggtttatgggttctcttacttataaggtgttcaacct 37850716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 671 - 783
Target Start/End: Complemental strand, 10351292 - 10351180
Alignment:
Q  671 caacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcactttta 770  Q
    ||||| || |||||||| |||| ||||||||||| ||| |||||||||  | |  ||||||| ||||||| ||||||||||||||||||||  | ||||     
T  10351292 caacataacaagtgagagagacgccacactcttacccaaaatcttaaagtaatgtgtttatgggttctctcacttataaagtgttcaacctctatttttc 10351193  T
Q  771 tatctgatgtgtg 783  Q
    |||||||||||||    
T  10351192 tatctgatgtgtg 10351180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 678 - 788
Target Start/End: Complemental strand, 17294702 - 17294592
Alignment:
Q  678 ataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctga 777  Q
    ||||| |||| |||||||||||||||| ||| || |||||  || | |||||||| || |||| ||||||||||||||||||||| ||| || |||| ||    
T  17294702 ataagcgagagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaagtgttcaacctttactcttttatccga 17294603  T
Q  778 tgtgtgacata 788  Q
    |||| ||||||    
T  17294602 tgtgggacata 17294592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 3550834 - 3550735
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| ||  ||||  || | ||||||||||| |||| |||||||| |||||||||||| ||| || ||||||||||| ||||||    
T  3550834 agacaccacactcttacccaaaactttaaggcaatgggtttatgagtcctcttacttataaggtgttcaacctttactattttatctgatgtgggacata 3550735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 655 - 802
Target Start/End: Original strand, 66099 - 66245
Alignment:
Q  655 tacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgt 754  Q
    |||||||| ||||||||||| | | ||||||||  | | ||||||||||| ||| || |||||  |  |||||||||| || |||| |||||||| ||||    
T  66099 tacatcgaggccagaacaaccatacaagtgaga--ggcgccacactcttacccaaaaccttaaggccataggtttatgggtcctcttacttataaggtgt 66196  T
Q  755 tc-aaccttcacttttatatctgatgtgtgacataattactcacgcttg 802  Q
    || |||||| |||||| |||| |||||| ||||| ||||||||| ||||    
T  66197 tcaaacctttacttttctatccgatgtgagacatgattactcacacttg 66245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 647 - 788
Target Start/End: Original strand, 3875333 - 3875474
Alignment:
Q  647 ggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactta 746  Q
    |||||||  ||||||| || |||||||| | |  ||||||| |||| ||||| ||||| | | || |||||  || | ||||||||||| |||| |||||    
T  3875333 ggaccgtccacatcgaggctagaacaaccacactagtgagagagactccacattcttacctaaaaccttaaggcaatgggtttatgagtcctcttactta 3875432  T
Q  747 taaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||| |||| ||||||| |||||| |||| |||||||||||||    
T  3875433 taaggtgtacaacctttacttttttatccgatgtgtgacata 3875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 684 - 788
Target Start/End: Original strand, 24600353 - 24600457
Alignment:
Q  684 gagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtg 783  Q
    |||| ||||||||||||||||  || || ||||| ||| |  ||||||||||||||| ||||||||  ||||||||||| |||||| |||| ||| || |    
T  24600353 gagagagacaccacactcttacacaaaaccttaagacaatgagtttatgagttctcttacttataatatgttcaacctttacttttctatccgatatggg 24600452  T
Q  784 acata 788  Q
    |||||    
T  24600453 acata 24600457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 780
Target Start/End: Original strand, 32594751 - 32594851
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||| ||| |||||||||||||||| ||| || ||||| ||| |  ||||||| || |||| |||||||| |||||||||||| ||| || |||||||||    
T  32594751 aagtaagagagacaccacactcttacccaaaaccttaagacaatgagtttatgggtcctcttacttataaggtgttcaacctttactattttatctgatg 32594850  T
Q  780 t 780  Q
    |    
T  32594851 t 32594851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 11977394 - 11977295
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||| |||||||||| ||| || |||||  |||||||||||||||| |||| |||||||| ||||||||| || ||| || || | |||||| ||||||    
T  11977394 agacatcacactcttacccaaaaccttaaggcattaggtttatgagtgctcttacttataaggtgttcaacatttactgttttacccgatgtgggacata 11977295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 625 - 781
Target Start/End: Original strand, 31767139 - 31767297
Alignment:
Q  625 gttggatcatgagggaagcttggg--accgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacat 722  Q
    ||||| ||||||||||||||||||  |||||  |||||||  | |||||||| | | |||  ||| ||||  |||||||||| ||| || |||||  |||    
T  31767139 gttgggtcatgagggaagcttgggggaccgtccacatcgagtctagaacaaccacacaagcaagatagacgtcacactcttacccaaaaccttaaggcat 31767238  T
Q  723 taggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||||| ||| || |||| |||||||| |||||||||||| ||| || |||| ||||||    
T  31767239 taggttaatgggtcctcttacttataaggtgttcaacctttactgttttatccgatgtg 31767297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 678 - 788
Target Start/End: Complemental strand, 34365050 - 34364940
Alignment:
Q  678 ataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctga 777  Q
    ||||| |||| |||||||||||||||| ||| || |||||  |  | |||||||| || |||| |||||||| |||||||||||| | | || |||| ||    
T  34365050 ataagcgagagagacaccacactcttacccaaaaccttaaggctatgggtttatgggtcctcttacttataaggtgttcaacctttattattttatccga 34364951  T
Q  778 tgtgtgacata 788  Q
    |||||||||||    
T  34364950 tgtgtgacata 34364940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 667 - 781
Target Start/End: Original strand, 39066222 - 39066336
Alignment:
Q  667 agaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcact 766  Q
    |||||||| | |||||| ||| |||||||||||||||||||| || ||||| ||| |   |||||| ||  ||| | |||||| |||||||||||| |||    
T  39066222 agaacaaccacataagtaagagagacaccacactcttatccaaaaccttaagacaatgattttatgggtcatcttagttataaggtgttcaacctttact 39066321  T
Q  767 tttatatctgatgtg 781  Q
    ||| |||| ||||||    
T  39066322 tttctatccgatgtg 39066336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 689 - 762
Target Start/End: Complemental strand, 29798313 - 29798240
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaacctt 762  Q
    ||||||||||||||||||||  | |||||  || | ||||||||||| |||| |||||||| ||||||||||||    
T  29798313 agacaccacactcttatccaagaccttaaggcaatgggtttatgagtcctcttacttataaggtgttcaacctt 29798240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 788
Target Start/End: Complemental strand, 34649544 - 34649453
Alignment:
Q  697 cactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||| ||| || |||||  ||||||||||||| |||||   |||||||| |||||||||||| ||| || |||| |||||| ||||||    
T  34649544 cactcttacccaaaaccttaaggcattaggtttatgggttcttgcacttataaggtgttcaacctttactcttttatccgatgtgggacata 34649453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 788
Target Start/End: Original strand, 41184505 - 41184568
Alignment:
Q  725 ggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||| || |||| ||||||||||||||||||||| ||| || |||| |||||| ||||||    
T  41184505 ggtttatgggtcctcttacttataaagtgttcaacctttactattttatccgatgtgagacata 41184568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 788
Target Start/End: Original strand, 44290498 - 44290601
Alignment:
Q  685 agaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtga 784  Q
    |||||||||||| ||||||| ||| || |||||  || | |||||||| || |||| ||||||||  ||||||||||| ||| || |||| |||||| ||    
T  44290498 agaaagacaccatactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataagatgttcaacctttactattttatccgatgtggga 44290597  T
Q  785 cata 788  Q
    ||||    
T  44290598 cata 44290601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 788
Target Start/End: Original strand, 50052067 - 50052166
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| ||  |||| | | |||||||||| || |||| ||||||||  ||||||||||| ||| || |||| |||||| ||||||    
T  50052067 agacaccacactcttacccaaaactttaagaaaataggtttatgggtcctcttacttataagatgttcaacctttactattttatccgatgtgggacata 50052166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 726 - 788
Target Start/End: Original strand, 22077576 - 22077638
Alignment:
Q  726 gtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||| || |||| |||||||| |||||||||||| |||||| |||| |||||| ||||||    
T  22077576 gtttatgggtcctcttacttataaggtgttcaacctttacttttctatccgatgtgagacata 22077638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 689 - 759
Target Start/End: Original strand, 44043816 - 44043886
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaac 759  Q
    |||||||||||||||| ||| |||||||| ||| | |||||||| ||  ||| |||||||| |||||||||    
T  44043816 agacaccacactcttacccaaaatcttaagacaatgggtttatgggtcatcttacttataaggtgttcaac 44043886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 778
Target Start/End: Original strand, 26661942 - 26662031
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgat 778  Q
    |||||||||||||||| ||| || |||||  || | |||||||| ||  ||| |||||||| |||||||||||| ||| || ||||||||    
T  26661942 agacaccacactcttacccaaaaccttaaggcaatcggtttatgggtcttctcacttataaggtgttcaacctttactcttttatctgat 26662031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 762
Target Start/End: Complemental strand, 41157105 - 41157032
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaacctt 762  Q
    |||||||||||||||| ||| || |||||| || |  ||||||| || |||| |||||||| ||||||||||||    
T  41157105 agacaccacactcttacccaaaaccttaaagcaatgagtttatgggtcctcttacttataaggtgttcaacctt 41157032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 655 - 788
Target Start/End: Complemental strand, 39914400 - 39914267
Alignment:
Q  655 tacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgt 754  Q
    |||||||| || ||||||||   |||||||||| |||||||||||||||||||| ||| ||||  ||||||||||||| || |||| | |||||| ||||    
T  39914400 tacatcgaggctagaacaaccgcataagtgagagagacaccacactcttatccaaaatattaaggcattaggtttatgggtcctcttatttataaggtgt 39914301  T
Q  755 tcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||  ||| || ||||||||||| ||||||    
T  39914300 tcaacctctactgttttatctgatgtgagacata 39914267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 656 - 780
Target Start/End: Original strand, 54017827 - 54017951
Alignment:
Q  656 acatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgtt 755  Q
    |||||||||| |||||||| | | |||| ||| |||||||||||||||| ||| || |||||  | |||||||||||||| |||| |||||||| |||||    
T  54017827 acatcgaagctagaacaaccacacaagtaagagagacaccacactcttacccaaaaccttaaggcgttaggtttatgagtcctcttacttataaggtgtt 54017926  T
Q  756 caaccttcacttttatatctgatgt 780  Q
    ||||||| ||| || |||| |||||    
T  54017927 caacctttactcttttatccgatgt 54017951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 680 - 781
Target Start/End: Original strand, 12114597 - 12114698
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||| ||| |||||||||||||||| ||| || ||||| ||| | |||||||| || |||| |||||||| |||||||||||| |||||| |||| ||||    
T  12114597 aagtaagagagacaccacactcttacccaaaaccttaagacaatgggtttatgggtcctcttacttataaggtgttcaacctttacttttctatccgatg 12114696  T
Q  780 tg 781  Q
    ||    
T  12114697 tg 12114698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 689 - 788
Target Start/End: Original strand, 43346835 - 43346934
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| || |||||  || |  ||||||| ||||||| |||||||| |||||||||||| ||| || ||||||||||| ||||||    
T  43346835 agacaccacactcttacccaaaaccttaaggcaatgagtttatgggttctcttacttataaggtgttcaacctttactattttatctgatgtgggacata 43346934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 656 - 788
Target Start/End: Original strand, 29644592 - 29644724
Alignment:
Q  656 acatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgtt 755  Q
    |||||||||| | ||||||   |||||  ||| |||| ||||||||||| ||| || ||||| ||| | |||||||| ||||||| |||||||| |||||    
T  29644592 acatcgaagctaaaacaaccgcataagcaagagagacgccacactcttacccaaaaccttaagacaatgggtttatgggttctcttacttataaggtgtt 29644691  T
Q  756 caaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||| ||| ||  ||| |||||| ||||||    
T  29644692 caacctttactctttaatccgatgtgggacata 29644724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 728 - 788
Target Start/End: Original strand, 33175747 - 33175807
Alignment:
Q  728 ttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||| ||||||| |||||||| |||||||||||| |||||| ||||||||||| ||||||    
T  33175747 ttatgggttctcttacttataaggtgttcaacctttacttttctatctgatgtgagacata 33175807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 788
Target Start/End: Complemental strand, 8328025 - 8327919
Alignment:
Q  682 gtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||||| |||||||||||||||| ||| || |||||  ||||| ||||||| ||||||| ||||||||  | |||| |||| ||| || |||| ||||||    
T  8328025 gtgagagagacaccacactcttacccaaaaccttaaggcattacgtttatgggttctcttacttataagatattcatcctttactcttttatccgatgtg 8327926  T
Q  782 tgacata 788  Q
     ||||||    
T  8327925 ggacata 8327919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 680 - 788
Target Start/End: Original strand, 47964553 - 47964661
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||||||| |||| ||||||||||| ||| || |||||  || |||||||||| || |||| ||||||| || ||||||||| ||| ||| |||| ||||    
T  47964553 aagtgagagagacgccacactcttacccaaaaccttaaggcaataggtttatgggtcctctcacttatatagcgttcaacctccacatttctatccgatg 47964652  T
Q  780 tgtgacata 788  Q
     | ||||||    
T  47964653 cgggacata 47964661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 780
Target Start/End: Original strand, 47964934 - 47965050
Alignment:
Q  664 gccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttc 763  Q
    ||||||||||  | |||||||||| |||| ||||||||||| ||| ||||||||  || | || |||||||  |||| ||||||| | |||| ||||| |    
T  47964934 gccagaacaatcatataagtgagagagacgccacactcttacccaaaatcttaaggcaatgggcttatgagccctctcacttatataatgtttaacctcc 47965033  T
Q  764 acttttatatctgatgt 780  Q
    |||||| |||| |||||    
T  47965034 acttttctatccgatgt 47965050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 788
Target Start/End: Original strand, 7767394 - 7767457
Alignment:
Q  725 ggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||||||| |||| | ||||||||||| ||||||| |||||| |||| |||||| ||||||    
T  7767394 ggtttatgagtcctcttagttataaagtgtccaacctttacttttctatccgatgtgggacata 7767457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 15772968 - 15772869
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||||||| || |||||| || |  ||||||| || |||| |||||||| ||||||||| || ||| || |||| ||| || ||||||    
T  15772968 agacaccacactcttatccaaaaccttaaagcaatgagtttatgggtcctcttacttataaggtgttcaacatttactcttttatccgatatgggacata 15772869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 788
Target Start/End: Original strand, 29644946 - 29645045
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||| ||||||||||| ||| || ||||| ||| | |||||||| || |||| |||||||| ||||| |||||| ||| || |||| |||||| ||||||    
T  29644946 agacgccacactcttacccaaaaccttaagacaatgggtttatgggtcctcttacttataaggtgtttaacctttactcttttatccgatgtgggacata 29645045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 726 - 788
Target Start/End: Original strand, 21832424 - 21832486
Alignment:
Q  726 gtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||| |||| |||||||| |||||||||||| |||||| ||||  ||||| ||||||    
T  21832424 gtttatgagtcctcttacttataaggtgttcaacctttacttttctatccaatgtgggacata 21832486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 730 - 788
Target Start/End: Original strand, 36986033 - 36986091
Alignment:
Q  730 atgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||||||| |||||||||||  ||||||||||||||| |||  |||||| ||||||    
T  36986033 atgagttctctcacttataaagttctcaaccttcacttttctattcgatgtgggacata 36986091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 730 - 788
Target Start/End: Original strand, 37011472 - 37011530
Alignment:
Q  730 atgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||||||| |||||||||||  ||||||||||||||| |||  |||||| ||||||    
T  37011472 atgagttctctcacttataaagttctcaaccttcacttttctattcgatgtgggacata 37011530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 689 - 779
Target Start/End: Original strand, 54018242 - 54018332
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||||||||||||||| ||| || |||||  | ||||||||||| || |||| |||||||| |||||||| ||| ||| || |||| ||||    
T  54018242 agacaccacactcttacccaaaaccttaaggcgttaggtttatgggtcctcttacttataaggtgttcaatctttactcttttatccgatg 54018332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 788
Target Start/End: Complemental strand, 25755470 - 25755409
Alignment:
Q  727 tttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||||| |||| |||||||| || ||||||||| ||| || ||||||||||| ||||||    
T  25755470 tttatgagtcctcttacttataaggtattcaacctttactcttttatctgatgtgagacata 25755409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 762
Target Start/End: Original strand, 32462602 - 32462675
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaacctt 762  Q
    |||| ||||||||||||||| || |||||| || ||||||||||  |  ||| |||||||| ||||||||||||    
T  32462602 agaccccacactcttatccaaaaccttaaagcaataggtttatggatcatcttacttataaggtgttcaacctt 32462675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 681 - 804
Target Start/End: Original strand, 13786037 - 13786159
Alignment:
Q  681 agtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgt 780  Q
    ||||||| ||||| |||||||||||||| |||||||| ||| ||| |||| | ||  ||| ||||||||||||||||||| |||||||| |||| |||||    
T  13786037 agtgagagagacatcacactcttatccaaaatcttaagacaatagatttacgggtcatcttacttataaagtgttcaaccatcactttt-tatccgatgt 13786135  T
Q  781 gtgacataattactcacgcttgtg 804  Q
    |  |||||||||||||| ||||||    
T  13786136 gaaacataattactcacacttgtg 13786159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 41632896 - 41632797
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| ||||||||| |||| |||||||| || |||| |||||||| |||||||||||| |||||| |||| |||||| ||||||    
T  41632896 agacaccacactcttacccaaaatcttaaagcattgggtttatgggtcctcttacttataaggtgttcaacctttacttttctatccgatgtgagacata 41632797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 689 - 788
Target Start/End: Original strand, 9498698 - 9498797
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| ||||||||  || | |||||||| || |||| |||||||| |||||||||||| ||| || ||||||||||| ||||||    
T  9498698 agacaccacactcttacccaaaatcttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattctatctgatgtgagacata 9498797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 685 - 788
Target Start/End: Original strand, 12662692 - 12662795
Alignment:
Q  685 agaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtga 784  Q
    |||||| ||||||||||||| ||| || ||||| ||| | | |||||| ||| ||| ||||||||| ||||||||||| ||| || |||| |||||| ||    
T  12662692 agaaaggcaccacactcttacccaaaaacttaagacaatggatttatgggttttcttacttataaaatgttcaacctttactattttatccgatgtggga 12662791  T
Q  785 cata 788  Q
    ||||    
T  12662792 cata 12662795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 780
Target Start/End: Complemental strand, 25328049 - 25327958
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgt 780  Q
    |||||||||||||||| ||| || |||||  ||||||||||||| || |||| |||||||| ||||||||| || ||| || |||| |||||    
T  25328049 agacaccacactcttacccaaaaccttaaggcattaggtttatgggtcctcttacttataaggtgttcaacttttactgttttatccgatgt 25327958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 681 - 788
Target Start/End: Original strand, 26074182 - 26074289
Alignment:
Q  681 agtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgt 780  Q
    ||||||| |||||||||||||||| ||| || |||||  || | |||| ||| || |||| || ||| | |||||||||||| |||||| |||| |||||    
T  26074182 agtgagagagacaccacactcttacccaaaaccttaaggcaatgggttcatgggtcctcttacatatgaggtgttcaacctttacttttttatccgatgt 26074281  T
Q  781 gtgacata 788  Q
    ||||||||    
T  26074282 gtgacata 26074289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 780
Target Start/End: Original strand, 42405640 - 42405731
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgt 780  Q
    |||||||||||||||| ||| || |||||  |||||||||||||||| || | |||| ||| |||||||||||| ||| || |||| |||||    
T  42405640 agacaccacactcttacccaaaaccttaaggcattaggtttatgagtccttttacttgtaaggtgttcaacctttactattttatccgatgt 42405731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 646 - 788
Target Start/End: Original strand, 1028518 - 1028660
Alignment:
Q  646 gggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactt 745  Q
    ||||||||  ||||||| || ||||||||   | |||||||| |||| ||||||||||| | | || |||||     |||||||||| || |||| ||||    
T  1028518 gggaccgtccacatcgaggctagaacaaccgcacaagtgagagagacgccacactcttaccaaaaaccttaaggttataggtttatgggtcctcttactt 1028617  T
Q  746 ataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||| |||| |||||| |||| |||||| ||||||    
T  1028618 ataaagtgttcatcctttacttttctatccgatgtgggacata 1028660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 788
Target Start/End: Original strand, 18603169 - 18603263
Alignment:
Q  694 ccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||||||| ||| || |||||  || | |||||||| || |||| |||||||| |||||||||||| ||| || ||||||||||| ||||||    
T  18603169 ccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatctgatgtgggacata 18603263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 726 - 788
Target Start/End: Complemental strand, 31509700 - 31509638
Alignment:
Q  726 gtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||| |||| |||||||||||| ||||||| ||||||| |||| |||||| ||||||    
T  31509700 gtttatgagtcctctcacttataaagtgctcaacctccacttttctatccgatgtgagacata 31509638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 726 - 788
Target Start/End: Complemental strand, 31509808 - 31509746
Alignment:
Q  726 gtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||| |||| |||||||||||| ||||||| ||||||| |||| |||||| ||||||    
T  31509808 gtttatgagtcctctcacttataaagtgctcaacctccacttttctatccgatgtgagacata 31509746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 646 - 788
Target Start/End: Complemental strand, 41170791 - 41170649
Alignment:
Q  646 gggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactt 745  Q
    |||||||| |||| ||| || |||||||| | | |||  ||||| |||||||||||||| ||| || |||||  || | |||||||| || |||| ||||    
T  41170791 gggaccgtctacaccgaggctagaacaaccacacaagcaagaaaaacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttactt 41170692  T
Q  746 ataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||  ||||||||||| ||| || |||| |||||| ||||||    
T  41170691 ataagatgttcaacctttactattttatccgatgtgggacata 41170649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 681 - 762
Target Start/End: Complemental strand, 26074734 - 26074653
Alignment:
Q  681 agtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaacctt 762  Q
    ||||||| |||||||||||||||| ||| || |||||  || | |||||||| || |||| |||||||| ||||||||||||    
T  26074734 agtgagagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctt 26074653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 726 - 769
Target Start/End: Complemental strand, 25816474 - 25816431
Alignment:
Q  726 gtttatgagttctctaacttataaagtgttcaaccttcactttt 769  Q
    |||||||||| |||||||||||| |||||||||| |||||||||    
T  25816474 gtttatgagtcctctaacttatatagtgttcaacattcactttt 25816431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 33747885 - 33747786
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||||||| ||||||||  || |  |||||||  | |||| ||||||||||| || |||||| ||| || |||| |||||| ||||||    
T  33747885 agacaccacactcttatccaaaatcttaaggcaatgagtttatggatcctcttacttataaagtatttaacctttactattttatccgatgtgggacata 33747786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 788
Target Start/End: Complemental strand, 35150128 - 35150022
Alignment:
Q  681 agtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgt 780  Q
    ||||||| |||||||||||| ||| ||| || ||||| ||| | | |||||| || |||| |||||||| |||||||||||| ||| || |||| |||||    
T  35150128 agtgagagagacaccacacttttacccaaaaccttaagacaatggatttatgggt-ctcttacttataaggtgttcaaccttgactcttttatccgatgt 35150030  T
Q  781 gtgacata 788  Q
    | ||||||    
T  35150029 gggacata 35150022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 689 - 781
Target Start/End: Complemental strand, 45433355 - 45433263
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||||||||||||||| ||| ||||||||  || |||||||||||||||||| |||||||| |||||||||||| ||| || |||| ||||||    
T  45433355 agacaccacactcttacccaaaatcttaaggcaataggtttatgagttctcttacttataaggtgttcaacctttactcttttatccgatgtg 45433263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 647 - 788
Target Start/End: Original strand, 34218036 - 34218177
Alignment:
Q  647 ggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactta 746  Q
    |||||||  ||||||| ||  ||||||| | | ||| |||| |||||||||||||||| ||| || ||||| ||| | ||||||||||| |||| |||||    
T  34218036 ggaccgtccacatcgaggcttgaacaaccatacaagcgagagagacaccacactcttacccaaaaccttaagacaatgggtttatgagtcctctcactta 34218135  T
Q  747 taaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||| ||||||||| || |||||| |||| |||||| ||||||    
T  34218136 taaggtgttcaacatttacttttttatccgatgtgagacata 34218177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 656 - 788
Target Start/End: Complemental strand, 7517727 - 7517595
Alignment:
Q  656 acatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgtt 755  Q
    ||||||| || |||||||| | | |||||||| |||||||||||||||| ||| || |||||  || | |||||||| || |||| |||||||| |||||    
T  7517727 acatcgaggctagaacaaccacacaagtgagacagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgtt 7517628  T
Q  756 caaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||| ||| || |||| |||||| ||||||    
T  7517627 caacctttactcttttatccgatgtgggacata 7517595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 646 - 788
Target Start/End: Original strand, 1085617 - 1085759
Alignment:
Q  646 gggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactt 745  Q
    ||||||||  ||||||| || |||||||| | | |||| ||| |||| ||||||||||| ||| || |||||  || | |||||||| || |||| ||||    
T  1085617 gggaccgtccacatcgaggctagaacaaccacacaagtaagagagacgccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttactt 1085716  T
Q  746 ataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||||||||||||| ||| || |||| |||||| ||||||    
T  1085717 ataaagtgttcaacctttactattttatccgatgtgggacata 1085759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 680 - 788
Target Start/End: Complemental strand, 30244393 - 30244285
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||||||| |||||||||||||||| ||| || |||||  || | ||||||||||| |||| |||||||| || ||||||||| ||| || |||| ||||    
T  30244393 aagtgagagagacaccacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataaggtcttcaacctttactcttttatccgatg 30244294  T
Q  780 tgtgacata 788  Q
    || ||||||    
T  30244293 tgggacata 30244285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 646 - 788
Target Start/End: Complemental strand, 45434793 - 45434651
Alignment:
Q  646 gggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactt 745  Q
    ||||||| | ||||||| || ||||||||   | |||| ||| ||||| |||||||||| ||| || |||||  || || ||||||| || |||| ||||    
T  45434793 gggaccgatcacatcgaggctagaacaactccacaagtaagagagacatcacactcttacccaaaaccttaaggcagtaagtttatgggtcctcttactt 45434694  T
Q  746 ataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||| |||||||||||| |||||| |||| |||||| ||||||    
T  45434693 ataaggtgttcaacctttacttttttatccgatgtgggacata 45434651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 689 - 781
Target Start/End: Original strand, 23421 - 23513
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||||||||||||||| ||| || |||||  || |||||||||| || |||| |||||||| |||||||||||| ||| || |||| ||||||    
T  23421 agacaccacactcttacccaaaaccttaaggcaataggtttatgggtcctcttacttataaggtgttcaacctttactattgtatccgatgtg 23513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 646 - 781
Target Start/End: Complemental strand, 11845348 - 11845213
Alignment:
Q  646 gggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactt 745  Q
    |||||||| |||||||| || ||||||||   | |||  ||| |||||||||||||||||||| || |||||  || | | |||||| || |||| ||||    
T  11845348 gggaccgtctacatcgaggctagaacaactgcacaagcaagagagacaccacactcttatccaaaaccttaaggcaatggatttatgggtcctcttactt 11845249  T
Q  746 ataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||| |||||||||||| ||| || |||| ||||||    
T  11845248 ataaggtgttcaacctttactattttatccgatgtg 11845213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 14681624 - 14681525
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| || ||||| ||| | |||||||| |  |||| ||||| || |||||||||||| ||| || ||||||||||| ||||||    
T  14681624 agacaccacactcttacccaaaaccttaagacaatgggtttatgggccctcttacttacaaggtgttcaacctttactattttatctgatgtgggacata 14681525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 781
Target Start/End: Complemental strand, 19122845 - 19122753
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||||||||||||||| ||| || |||||  || | | ||||||||| |||| |||||||| |||||||||||| ||| || |||| ||||||    
T  19122845 agacaccacactcttacccaaaaccttaaggcaatggatttatgagtcctcttacttataaggtgttcaacctttactattttatccgatgtg 19122753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 802
Target Start/End: Original strand, 22566711 - 22566818
Alignment:
Q  694 ccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacataattac 793  Q
    ||||||||||| ||| || |||||  || | |||||||| || |||| |||||||| |||||||||||| ||| || |||| |||||| ||||| |||||    
T  22566711 ccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactcttttatccgatgtgggacat-attac 22566809  T
Q  794 tcacgcttg 802  Q
    |||| ||||    
T  22566810 tcacacttg 22566818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 761
Target Start/End: Original strand, 36534828 - 36534900
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaacct 761  Q
    |||| ||||||||||| ||| || ||||| || ||||||||||| || |||| |||||||| |||||||||||    
T  36534828 agacgccacactcttacccaaaaccttaagactttaggtttatgggtcctcttacttataaggtgttcaacct 36534900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 788
Target Start/End: Complemental strand, 47129274 - 47129110
Alignment:
Q  625 gttggatcatgagggaagcttggg-accgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacatt 723  Q
    ||||||||||||||| |||| ||| ||||| ||||| || || |||||||| | |   |||||| ||||||||||||| || ||| || |||||| |  |    
T  47129274 gttggatcatgaggggagctcggggaccgtctacattgaggctagaacaaccacacttgtgagagagacaccacactcctacccaaaaccttaaagcgat 47129175  T
Q  724 aggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
     |||||||| || |||| ||||||||   |||||||||| ||| || |||| |||||| ||||||    
T  47129174 gggtttatgggtcctcttacttataagaggttcaacctttactattttatccgatgtgagacata 47129110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 742 - 788
Target Start/End: Complemental strand, 10341893 - 10341847
Alignment:
Q  742 acttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||||||| ||||||| |||| |||||| ||||||    
T  10341893 acttataaagtgttcaacctccacttttctatccgatgtgagacata 10341847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 678 - 788
Target Start/End: Complemental strand, 28034354 - 28034244
Alignment:
Q  678 ataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctga 777  Q
    |||||||||| |||| ||||||||||| | | || |||||| || || ||||||| ||||||| |||||||||||||||||||| ||||||| |||| ||    
T  28034354 ataagtgagagagacgccacactcttacctaaaaccttaaagcaataagtttatgggttctctcacttataaagtgttcaacctccacttttctatccga 28034255  T
Q  778 tgtgtgacata 788  Q
    || | ||||||    
T  28034254 tgcgggacata 28034244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 634 - 788
Target Start/End: Complemental strand, 39404567 - 39404413
Alignment:
Q  634 tgagggaagcttgggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatga 733  Q
    |||||| |||| ||||||||| ||||||| || |||||||| | | |||  ||| |||||||||| ||||  ||| || |||||  |  ||||||||||     
T  39404567 tgaggggagctcgggaccgttcacatcgaggctagaacaaccacacaagcaagagagacaccacattcttgcccaaaaccttaaggctataggtttatgg 39404468  T
Q  734 gttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    || |||| |||||||| |||||| ||||| ||| || ||||||||||| ||||||    
T  39404467 gtcctcttacttataaggtgttccacctttactcttttatctgatgtgggacata 39404413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 656 - 781
Target Start/End: Complemental strand, 54936342 - 54936218
Alignment:
Q  656 acatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgtt 755  Q
    ||||||| || |||||||| | ||| |||||| |||||||||||||||| ||| || |||||  || | |||||||| || |||| ||||| || |||||    
T  54936342 acatcgaggctagaacaaccacata-gtgagagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttacaaggtgtt 54936244  T
Q  756 caaccttcacttttatatctgatgtg 781  Q
    ||||||| ||| || |||||||||||    
T  54936243 caacctttactattttatctgatgtg 54936218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 788
Target Start/End: Original strand, 15841401 - 15841509
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||||||| ||||| |||||||||| ||| || |||||  || |  |||||||| | |||| ||||| |||||||||||||| ||||||| ||| |||||    
T  15841401 aagtgagagagacatcacactcttacccaaaaccttaaggcaatgtgtttatgaatcctctcacttacaaagtgttcaacctccacttttctatttgatg 15841500  T
Q  780 tgtgacata 788  Q
    || ||||||    
T  15841501 tgagacata 15841509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 788
Target Start/End: Complemental strand, 50002549 - 50002441
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||| ||| |||||||||||||||| ||| || ||||| ||| | | |||||| || |||| ||||| ||||||||||||||| ||| || |||| ||||    
T  50002549 aagtaagagagacaccacactcttacccaaaaccttaagacaatggatttatgggtcctcttacttaaaaagtgttcaacctttactcttttatccgatg 50002450  T
Q  780 tgtgacata 788  Q
    || ||||||    
T  50002449 tgagacata 50002441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 788
Target Start/End: Original strand, 45489374 - 45489472
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||| |||||||||| | | ||||||||| || |||||||| ||||||||| |||||||  |||||||||||| ||| || |||| |||||| ||||||    
T  45489374 agacatcacactcttaccaaaaatcttaaa-cagtaggtttaagagttctcttacttatatggtgttcaacctttactcttttatccgatgtgagacata 45489472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 720 - 774
Target Start/End: Original strand, 31249931 - 31249985
Alignment:
Q  720 cattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatc 774  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||| ||| ||||    
T  31249931 cattaggtttatgggtcctctaacttataaagtgttcaacattcacctttctatc 31249985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 788
Target Start/End: Original strand, 54741213 - 54741319
Alignment:
Q  682 gtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||||| ||| || ||||||||||||| || ||||| ||| |  || |||| || |||| |||||||| |||||||||||| |||||| |||| ||||||    
T  54741213 gtgagagagagactacactcttatccaaaaccttaagacaatctgtgtatgggtcctcttacttataaggtgttcaacctttacttttctatccgatgtg 54741312  T
Q  782 tgacata 788  Q
     ||||||    
T  54741313 agacata 54741319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 689 - 802
Target Start/End: Original strand, 50630797 - 50630909
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| || |||||  || | |||||||| || |||| |||||||| |||||||||||| ||| || |||| |||||  |||||     
T  50630797 agacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataatgtgttcaacctttactattttatccgatgtaggacat- 50630895  T
Q  789 attactcacgcttg 802  Q
    || |||||||||||    
T  50630896 ataactcacgcttg 50630909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 789
Target Start/End: Complemental strand, 54109059 - 54108927
Alignment:
Q  656 acatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgtt 755  Q
    |||||||||| ||||||||   | |||  ||| |||||||||||||||| ||| || |||||  || | |||||||| || |||| |||||||| |||||    
T  54109059 acatcgaagctagaacaaccgcacaagcaagagagacaccacactcttacccaaaa-cttaaggcaatgggtttatgggtcctcttacttataaggtgtt 54108961  T
Q  756 caaccttcacttttatatctgatgtgtgacataa 789  Q
    ||||||| ||| || |||| |||||| |||||||    
T  54108960 caacctttactattttatccgatgtgggacataa 54108927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 680 - 788
Target Start/End: Original strand, 4955350 - 4955458
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||| ||| |||| ||||||||||| ||| || |||||  || | ||||||||||| |||| |||||||| |||||||||||| ||| || |||| |||     
T  4955350 aagtaagagagacgccacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataaggtgttcaaccttaactattttatccgata 4955449  T
Q  780 tgtgacata 788  Q
    || ||||||    
T  4955450 tgagacata 4955458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 788
Target Start/End: Complemental strand, 3340925 - 3340822
Alignment:
Q  685 agaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtga 784  Q
    |||||||||||||||||||| ||| || |||||  || | |||||||| || |||| |||||||| ||| |||||||| ||| ||  |||||||| | ||    
T  3340925 agaaagacaccacactcttacccaaaaccttaaggcagtgggtttatgggtcctcttacttataaggtgctcaacctttactctttcatctgatgcggga 3340826  T
Q  785 cata 788  Q
    ||||    
T  3340825 cata 3340822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 788
Target Start/End: Complemental strand, 3341246 - 3341143
Alignment:
Q  685 agaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtga 784  Q
    ||||||||| |||||||||| ||| |||||||||||| |    ||||| || |||| |||||||||||||| |||||| ||| || ||||  ||||| ||    
T  3341246 agaaagacatcacactcttacccaaaatcttaaaacaatgatgttatgggtcctcttacttataaagtgtttaacctttactcttttatccaatgtggga 3341147  T
Q  785 cata 788  Q
    ||||    
T  3341146 cata 3341143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 646 - 781
Target Start/End: Original strand, 22183263 - 22183398
Alignment:
Q  646 gggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactt 745  Q
    ||||||||  ||||||| || ||||||||   | |||||||| |||| ||||||||||||||| || |||||  || | |||||||| || || | ||||    
T  22183263 gggaccgtccacatcgaggctagaacaaccgtacaagtgagagagacgccacactcttatccaaaaccttaaggcaatgggtttatgggtccttttactt 22183362  T
Q  746 ataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    ||||| |||||||| || ||| || |||| ||||||    
T  22183363 ataaattgttcaacatttactcttttatccgatgtg 22183398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 788
Target Start/End: Complemental strand, 36629395 - 36629252
Alignment:
Q  645 tgggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaact 744  Q
    |||||||||  ||||||| || |||||||| | | |||  ||| |||||||||||||||| ||| || |||||  || |  ||||||| || |||| |||    
T  36629395 tgggaccgtccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttact 36629296  T
Q  745 tataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||| ||||| ||| || |||||| |||| |||||| ||||||    
T  36629295 tataaggtgtttaacttttacttttctatccgatgtgggacata 36629252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 788
Target Start/End: Original strand, 41707499 - 41707605
Alignment:
Q  681 agtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgt 780  Q
    ||||||| |||||||||||||||| ||| || ||||| ||| |  ||||||| ||||| | |||||||  |||||||||||| ||| || |||| |||||    
T  41707499 agtgagagagacaccacactctta-ccaaaaccttaagacaatgagtttatgggttcttttacttatatggtgttcaacctttactcttttatccgatgt 41707597  T
Q  781 gtgacata 788  Q
    | ||||||    
T  41707598 gggacata 41707605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 723 - 788
Target Start/End: Complemental strand, 43174587 - 43174521
Alignment:
Q  723 taggtttatgagttctctaacttataaagtgttcaaccttcact-tttatatctgatgtgtgacata 788  Q
    |||||||||| || |||| |||||||| |||||||||||| ||| ||| ||||||||||||| ||||    
T  43174587 taggtttatgtgtcctcttacttataaggtgttcaacctttactctttttatctgatgtgtggcata 43174521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 788
Target Start/End: Original strand, 1731691 - 1731788
Alignment:
Q  691 acaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||| ||| || |||||  || | |||||||| || |||| | ||||||  ||||||||||| ||| || ||||||||||| ||||||    
T  1731691 acaccacactcttacccaaaaccttaaggcaattggtttatgggtcctcttatttataagatgttcaacctttactgttttatctgatgtgggacata 1731788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 762
Target Start/End: Original strand, 22027983 - 22028076
Alignment:
Q  669 aacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaacctt 762  Q
    |||||| | ||||| |||| |||||||||| ||||| ||| || |||||  || || ||||||| || |||| |||||||| ||||||||||||    
T  22027983 aacaaccacataagcgagagagacaccacattcttacccaaaaccttaaggcaatatgtttatgggtcctcttacttataaggtgttcaacctt 22028076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 689 - 781
Target Start/End: Complemental strand, 8482040 - 8481948
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||||||||||||||| ||| ||||||||  || |  ||||||||||  ||| | |||||||||||||||||| |||||||||||||||||||    
T  8482040 agacaccacactcttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccacttttatatctgatgtg 8481948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 646 - 781
Target Start/End: Original strand, 10073992 - 10074127
Alignment:
Q  646 gggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactt 745  Q
    ||||||||  || |||| || |||||||| ||||||| |||| |||||||||||| ||| ||| || |||||  || | |||||||| || |||| ||||    
T  10073992 gggaccgtccacgtcgaggctagaacaaccaaataagcgagagagacaccacacttttacccaaaaccttaaggcaatgggtttatgggtcctcttactt 10074091  T
Q  746 ataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||| ||||||||| || |||||| |||| ||||||    
T  10074092 ataaggtgttcaacgtttacttttctatccgatgtg 10074127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 656 - 781
Target Start/End: Original strand, 10074374 - 10074499
Alignment:
Q  656 acatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgtt 755  Q
    ||||||| || |||||||| | |  ||||||| |||||||||||||||| ||| || |||||  || |  ||||||| || |||| |||||||| |||||    
T  10074374 acatcgaggctagaacaaccacactagtgagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgtt 10074473  T
Q  756 caaccttcacttttatatctgatgtg 781  Q
    ||||||| |||||| |||| ||||||    
T  10074474 caacctttacttttctatccgatgtg 10074499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 631 - 788
Target Start/End: Original strand, 12071675 - 12071834
Alignment:
Q  631 tcatgagggaagctt--gggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtt 728  Q
    ||||||||| |||||  ||||||||| ||||||| || |||||||| | | |||||||| |||| ||||||||||| ||| || |||||     ||||||    
T  12071675 tcatgaggggagcttaggggaccgttcacatcgaggctagaacaaccacacaagtgagagagacgccacactcttacccaaaaccttaaggtcataggtt 12071774  T
Q  729 tatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||| || |   ||||||||||||||| || || |||| ||||||||| | ||||||    
T  12071775 tatgagtcctttctattataaagtgttcaaactccatttttctatctgatgcgagacata 12071834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 689 - 781
Target Start/End: Complemental strand, 16107792 - 16107700
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||||||||||||||| ||| || |||||  || | ||||||||||| |||| |||||||| ||||| |||||| |||||| |||| ||||||    
T  16107792 agacaccacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataaggtgtttaacctttacttttttatccgatgtg 16107700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 1846862 - 1846763
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||||||| || |||||  || | | |||||| || |||| |||||||| |||||||||||| ||| || |||| |||||| ||||||    
T  1846862 agacaccacactcttatccaaaaccttaaggcaatggatttatgggtgctcttacttataaggtgttcaacctttactattttatccgatgtgagacata 1846763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 685 - 788
Target Start/End: Complemental strand, 2377872 - 2377769
Alignment:
Q  685 agaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtga 784  Q
    |||||||||||||||||||| ||| || |||||  || | |||||||| || |||| |||||||| |||||||||||| ||| || || | |||||| ||    
T  2377872 agaaagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactcttttaaccgatgtggga 2377773  T
Q  785 cata 788  Q
    ||||    
T  2377772 cata 2377769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 3409373 - 3409274
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| || |||||  || |  ||||||| || |||| |||||||| |||||||||||| ||| || ||||||||||| ||||||    
T  3409373 agacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttactattttatctgatgtgggacata 3409274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 647 - 769
Target Start/End: Original strand, 10073618 - 10073740
Alignment:
Q  647 ggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactta 746  Q
    |||||||  ||||||| || |||||||| | |  ||||||| |||||||||||||||| ||| ||||||||  || |  |||||||  | |||| |||||    
T  10073618 ggaccgtccacatcgatgctagaacaaccacactagtgagagagacaccacactcttacccaaaatcttaagccaatgagtttatggatcctcttactta 10073717  T
Q  747 taaagtgttcaaccttcactttt 769  Q
    ||| |||||||||||| ||||||    
T  10073718 taaggtgttcaacctttactttt 10073740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 689 - 786
Target Start/End: Complemental strand, 16454689 - 16454592
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgaca 786  Q
    |||| ||||||||||||||| ||||||||  || | |||||||| || |||| |||||||| ||||||||| || | | || ||||||||||| ||||    
T  16454689 agacgccacactcttatccaaaatcttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacttttattcttttatctgatgtgggaca 16454592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 689 - 786
Target Start/End: Complemental strand, 16455021 - 16454924
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgaca 786  Q
    |||| ||||||||||| ||| || |||||  || |||||||||| || || | |||||||| |||||||||||| ||| || ||||||||||| ||||    
T  16455021 agacgccacactcttacccaaaaccttaaggcaataggtttatgggtcctattacttataaggtgttcaacctttactcttttatctgatgtgggaca 16454924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 684 - 788
Target Start/End: Original strand, 593748 - 593852
Alignment:
Q  684 gagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtg 783  Q
    |||| ||| |||||||| ||| ||| || |||||  || | ||||||||||| |||| |||||||| |||||||||||| ||| || |||| |||||| |    
T  593748 gagagagataccacactattacccaaaaccttaaggcagtcggtttatgagtcctcttacttataaggtgttcaacctttactcttttatccgatgtggg 593847  T
Q  784 acata 788  Q
    |||||    
T  593848 acata 593852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 680 - 788
Target Start/End: Original strand, 32460615 - 32460723
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    ||||||||||||   |||||||||| ||| || |||||  || | ||||||||||| |||| |||||||| |||||||||||| ||| || |||  ||||    
T  32460615 aagtgagaaagatgtcacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataaggtgttcaacctttactattttatacgatg 32460714  T
Q  780 tgtgacata 788  Q
    || ||||||    
T  32460715 tgggacata 32460723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 788
Target Start/End: Complemental strand, 33605713 - 33605669
Alignment:
Q  744 ttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||    
T  33605713 ttataaagtgttcaacctccacttttctatctgatgtgagacata 33605669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 29518617 - 29518518
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| || |||||   | | |||||||| || |||| |||||||| |||||||||||| ||| || |||| |||||| ||||||    
T  29518617 agacaccacactcttacccaaaaccttaaggtaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacata 29518518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 29519034 - 29518935
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| || |||||   | | |||||||| || |||| |||||||| |||||||||||| ||| || |||| |||||| ||||||    
T  29519034 agacaccacactcttacccaaaaccttaaggtaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacata 29518935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 32741293 - 32741194
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| || |||||   | | |||||||| || |||| |||||||| |||||||||||| ||| || |||| |||||| ||||||    
T  32741293 agacaccacactcttacccaaaaccttaaggtaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacata 32741194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 762
Target Start/End: Original strand, 2578487 - 2578560
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaacctt 762  Q
    |||||||||||||||| ||| || |||||  |  | |||||||| || |||| |||||||||||||||||||||    
T  2578487 agacaccacactcttacccaaaaccttaaggctatgggtttatgggtcctcttacttataaagtgttcaacctt 2578560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 788
Target Start/End: Complemental strand, 35210316 - 35210219
Alignment:
Q  691 acaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||| ||| || |||||  || | | |||||| || |||| |||||||| |||||||||||| ||| || |||| |||||| ||||||    
T  35210316 acaccacactcttacccaaaaccttaaggcaatggttttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgagacata 35210219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 689 - 788
Target Start/End: Original strand, 15511539 - 15511638
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| |||||||| ||| | |||||||| || |||| |||||||| |||||||||||| ||| || |||| | |||||||||||    
T  15511539 agacaccacactcttacccaaaatcttaagacaatgggtttatgggtcctcttacttataacgtgttcaacctttactcttttatccgttgtgtgacata 15511638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 680 - 788
Target Start/End: Original strand, 29874058 - 29874166
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    ||||| || |||| ||||||||||||||| || |||||  || | |||||||| || |||  | |||||||||||||||||| ||||||| |||||||||    
T  29874058 aagtgggatagacgccacactcttatccaaaaccttaaggcaatgggtttatgggtcctcccaattataaagtgttcaacctccacttttctatctgatg 29874157  T
Q  780 tgtgacata 788  Q
    || ||||||    
T  29874158 tgggacata 29874166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 689 - 788
Target Start/End: Original strand, 5543042 - 5543141
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| ||||||||  || ||||||||||  | |||| |||||||| |||||||||||| ||| || |||| |||||| ||||||    
T  5543042 agacaccacactcttacccaaaatcttaaggcaataggtttatggatcctcttacttataaggtgttcaacctttactattttatcggatgtgggacata 5543141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 690 - 788
Target Start/End: Complemental strand, 962711 - 962613
Alignment:
Q  690 gacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||| |||||||||| ||| || ||||| ||| | |||||||| || |||| |||||||| |||||||||||| |||||| |||| |||||| ||||||    
T  962711 gacaacacactcttacccaaaaccttaagacaatgggtttatgggtcctctcacttataaggtgttcaacctttacttttctatccgatgtgggacata 962613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 646 - 780
Target Start/End: Complemental strand, 42514806 - 42514672
Alignment:
Q  646 gggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactt 745  Q
    ||||||||  ||||||| || ||||||||   | |||| ||| |||| ||||||||||| ||| ||||||||  |  | |||||||| || |||| ||||    
T  42514806 gggaccgtccacatcgaggctagaacaaccccacaagtaagagagacgccacactcttacccaaaatcttaaggcgatgggtttatgggtcctcttactt 42514707  T
Q  746 ataaagtgttcaaccttcacttttatatctgatgt 780  Q
    |||| |||||||||||| |||||| ||||||||||    
T  42514706 ataaggtgttcaacctttacttttctatctgatgt 42514672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 726 - 787
Target Start/End: Original strand, 28254193 - 28254254
Alignment:
Q  726 gtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacat 787  Q
    |||||||||| |||| ||||||||||||||||||||| |||||| |||| |||||| |||||    
T  28254193 gtttatgagtcctcttacttataaagtgttcaacctttacttttctatccgatgtgagacat 28254254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 680 - 781
Target Start/End: Original strand, 33561486 - 33561587
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||||||| ||| | |||||||||| ||| || ||||| ||| |  ||||||| || |||| |||||||||||||| ||||| ||||||| |||||||||    
T  33561486 aagtgagagagatatcacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccacttttctatctgatg 33561585  T
Q  780 tg 781  Q
    ||    
T  33561586 tg 33561587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 646 - 781
Target Start/End: Original strand, 36178172 - 36178307
Alignment:
Q  646 gggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactt 745  Q
    |||||||| |||||||| || | |||||| | | |||  ||| || ||||||||||||| ||| ||||||||  || | |||||||| |||| || ||||    
T  36178172 gggaccgtctacatcgaggctataacaaccacacaagcaagagaggcaccacactcttacccaaaatcttaaggcaatgggtttatgggttcccttactt 36178271  T
Q  746 ataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||| |||||||||||| ||| || |||| ||||||    
T  36178272 ataaggtgttcaacctttactattttatccgatgtg 36178307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 788
Target Start/End: Original strand, 36178649 - 36178748
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| || |||||  || | |||||||| || |||| |||||||| |||||||||||| ||| || |||| |||||| ||||||    
T  36178649 agacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacata 36178748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 647 - 781
Target Start/End: Complemental strand, 33731804 - 33731670
Alignment:
Q  647 ggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaactta 746  Q
    |||||||||||||||| || ||||||||   |||||  ||| |||||||| ||||||| ||| || |||||  || ||||||||||  | |||| |||||    
T  33731804 ggaccgtttacatcgaggctagaacaaccgcataagcaagagagacaccatactcttacccaaaaccttaaggcaataggtttatggatcctcttactta 33731705  T
Q  747 taaagtgttcaaccttcacttttatatctgatgtg 781  Q
    ||| ||| |||||||| ||| || |||| ||||||    
T  33731704 taaggtgctcaacctttactcttttatccgatgtg 33731670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 695 - 781
Target Start/End: Original strand, 33953821 - 33953907
Alignment:
Q  695 cacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||||||||| ||| ||| ||||  ||  ||||||||| || |||| ||||||| |||||||||||| ||||||| |||||||||||    
T  33953821 cacactcttacccaaaattttaaggcaacaggtttatgggtcctctcacttatatagtgttcaacctccacttttctatctgatgtg 33953907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 726 - 787
Target Start/End: Original strand, 29873618 - 29873679
Alignment:
Q  726 gtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacat 787  Q
    |||||||||| |||  ||||||||| |||||||||| ||||||| ||||||||||| |||||    
T  29873618 gtttatgagtcctcccacttataaaatgttcaacctccacttttctatctgatgtgggacat 29873679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 723 - 788
Target Start/End: Complemental strand, 40733597 - 40733532
Alignment:
Q  723 taggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||| || |||| |||||||| ||||||||| || |||||| ||||||||||| ||||||    
T  40733597 taggtttatgggtcctcttacttataaggtgttcaacatttacttttttatctgatgtgggacata 40733532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 728 - 788
Target Start/End: Complemental strand, 7598684 - 7598624
Alignment:
Q  728 ttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||| || |||| |||||||| |||||||||||| |||||| ||||||||||| ||||||    
T  7598684 ttatgggtcctcttacttataaggtgttcaacctttacttttttatctgatgtgggacata 7598624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 684 - 788
Target Start/End: Original strand, 28254276 - 28254380
Alignment:
Q  684 gagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtg 783  Q
    |||| |||||||||||||||| ||| || |||||  || |  ||||||| || |||| ||||||||  ||||||||||| |||||| |||| |||||| |    
T  28254276 gagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataagatgttcaacctttacttttctatccgatgtggg 28254375  T
Q  784 acata 788  Q
    |||||    
T  28254376 acata 28254380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 680 - 788
Target Start/End: Complemental strand, 30313300 - 30313193
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||||||| |||| ||||||||||| ||| ||||||||  || |  |||| || || |||| |||||||| ||||||||||| ||||||| |||| ||||    
T  30313300 aagtgagagagacgccacactcttacccaaaatcttaaggcaatgagtttttgggtcctctcacttataa-gtgttcaacctccacttttctatccgatg 30313202  T
Q  780 tgtgacata 788  Q
    || ||||||    
T  30313201 tgagacata 30313193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 788
Target Start/End: Original strand, 33954281 - 33954404
Alignment:
Q  664 gccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttc 763  Q
    ||||||||||| | |||||||||| |||| ||||||||||| ||| |||| |||  || ||| |||||||||  | ||| ||||| | |||| |||||      
T  33954281 gccagaacaaccatataagtgagagagacgccacactcttacccaaaatcgtaaggca-tagatttatgagtcatttaagttatataatgtttaacctca 33954379  T
Q  764 acttttatatctgatgtgtgacata 788  Q
    |||||| ||||||||||| ||||||    
T  33954380 acttttctatctgatgtgggacata 33954404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 788
Target Start/End: Original strand, 40163416 - 40163516
Alignment:
Q  689 agacaccacactcttatccacaatcttaaa-acattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacat 787  Q
    |||||||||||| ||| ||| || |||||| ||| |||||| ||| ||  ||| |||||||| |||||||||||| |||||| |||| |||||| |||||    
T  40163416 agacaccacacttttacccaaaaccttaaagacactaggttaatgggtcatcttacttataaggtgttcaacctttacttttctatccgatgtgggacat 40163515  T
Q  788 a 788  Q
    |    
T  40163516 a 40163516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 680 - 788
Target Start/End: Original strand, 40679664 - 40679772
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||| ||| |||| ||||||||||| ||| ||||||||  |  | |||||||| ||||||| |||||||| |||||||||| | |||||| |||| |||     
T  40679664 aagtaagagagacgccacactcttacccaaaatcttaaggcgatgggtttatgggttctcttacttataaggtgttcaacccttacttttctatccgata 40679763  T
Q  780 tgtgacata 788  Q
    || ||||||    
T  40679764 tgggacata 40679772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 724 - 788
Target Start/End: Original strand, 41678446 - 41678510
Alignment:
Q  724 aggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||||| || |||| |||||||||||||| ||||| | ||||| ||||||||||| ||||||    
T  41678446 aggtttatgggtcctctcacttataaagtgtttaacctccccttttctatctgatgtgagacata 41678510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 6421499 - 6421400
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| || || ||  || |  |||||||||| |||| |||||||| |||||||||||| ||| || |||| |||||| ||||||    
T  6421499 agacaccacactcttacccaaaacctcaaggcaatgagtttatgagtcctcttacttataaggtgttcaacctttactcttttatccgatgtgggacata 6421400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 787
Target Start/End: Complemental strand, 6422257 - 6422126
Alignment:
Q  656 acatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgtt 755  Q
    ||||||| || |||||||| | | |||  ||| |||||||||||||||| | | || |||||  |  | |||||||| || |||| | |||||| |||||    
T  6422257 acatcgaggctagaacaaccacacaagcaagagagacaccacactcttacctaaaaccttaaggctatgggtttatgggtcctcttaattataatgtgtt 6422158  T
Q  756 caaccttcacttttatatctgatgtgtgacat 787  Q
    ||||||| |||||| ||||||||||| |||||    
T  6422157 caacctttacttttttatctgatgtgggacat 6422126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 726 - 788
Target Start/End: Complemental strand, 1769969 - 1769907
Alignment:
Q  726 gtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||| |||| |||||||| ||||||||| || ||| || |||| |||||||||||||    
T  1769969 gtttatgagtcctcttacttataaggtgttcaacttttactcttttatccgatgtgtgacata 1769907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 646 - 732
Target Start/End: Complemental strand, 6421888 - 6421802
Alignment:
Q  646 gggaccgtttacatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatg 732  Q
    ||||||||  ||||||| ||||||||||| | | |||| ||| |||||||||||||||| ||| || |||||  || ||||||||||    
T  6421888 gggaccgtccacatcgaggccagaacaaccacacaagttagagagacaccacactcttacccaaaaccttaaggcaataggtttatg 6421802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 678 - 788
Target Start/End: Original strand, 28531347 - 28531457
Alignment:
Q  678 ataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctga 777  Q
    |||| ||||| || ||||||||||||| ||| ||||||||  || |  ||||||| |  |||| |||||||| ||||||||||||  ||||| |||| ||    
T  28531347 ataactgagagagtcaccacactcttacccaaaatcttaaggcaatgagtttatgggacctcttacttataaggtgttcaacctttgcttttctatccga 28531446  T
Q  778 tgtgtgacata 788  Q
    |||| ||||||    
T  28531447 tgtgggacata 28531457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 698 - 788
Target Start/End: Original strand, 38796673 - 38796763
Alignment:
Q  698 actcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||| ||| || |||||  ||||||||||||| || |||| |||||||| |||||||||||| | | || |||| |||||| ||||||    
T  38796673 actcttacccaaaaccttaaggcattaggtttatgggtcctcttacttataaggtgttcaacctttattgttttatcagatgtgggacata 38796763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 762
Target Start/End: Original strand, 5542669 - 5542742
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaacctt 762  Q
    |||||||||||||||| | | || |||||  || |||||||||| || |||| |||||||| ||||||||||||    
T  5542669 agacaccacactcttaccaaaaaccttaaggcaataggtttatgggtcctcttacttataaggtgttcaacctt 5542742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 788
Target Start/End: Complemental strand, 37106300 - 37106203
Alignment:
Q  691 acaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||| ||| || |||||   | | |||||||| || |||| |||||||| |||||||||||| ||| || |||| |||||| ||||||    
T  37106300 acaccacactcttacccaaaaccttaaggaaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacata 37106203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 689 - 781
Target Start/End: Complemental strand, 5471 - 5379
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||||||||||||||||||| ||||||||  || | |||||||| || |||| |||||||| |||||||||||| ||| || |||| ||||||    
T  5471 agacaccacactcttatccaaaatcttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactgttctatccgatgtg 5379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 689 - 781
Target Start/End: Original strand, 20870617 - 20870709
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||||||||||||||||||| ||||||||  || | |||||||| || |||| ||||||||  ||||||||||| ||| || |||||||||||    
T  20870617 agacaccacactcttatccaaaatcttaaggcagtgggtttatgggtcctcttacttataagatgttcaacctttactattttatctgatgtg 20870709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 656 - 788
Target Start/End: Complemental strand, 30359756 - 30359624
Alignment:
Q  656 acatcgaagccagaacaacaaaataagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgtt 755  Q
    |||||||||  ||||||||   |||||| ||| |||||||||||||||| ||| ||||||||     | ||||||||||| |||| |||||||| |||||    
T  30359756 acatcgaagttagaacaaccgcataagtaagagagacaccacactcttacccaaaatcttaaggttatgggtttatgagtcctcttacttataaggtgtt 30359657  T
Q  756 caaccttcacttttatatctgatgtgtgacata 788  Q
    |||| || ||| || ||||||||||| ||||||    
T  30359656 caacttttactcttttatctgatgtgagacata 30359624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 689 - 788
Target Start/End: Complemental strand, 3669801 - 3669702
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||| || |||||  || |  |||||||||| |||| |||||||| |||||||||||| ||| || ||||||||||| ||||||    
T  3669801 agacaccacactcttacccaaaaccttaaggcaatgagtttatgagtcctcttacttataaggtgttcaacctttactattttatctgatgtgggacata 3669702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 685 - 787
Target Start/End: Original strand, 8918804 - 8918906
Alignment:
Q  685 agaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtga 784  Q
    ||||||||  |||||||||| ||| || |||||  || |||||||||| || |||| ||||||||||||||||||||| ||| |  ||||||||||| ||    
T  8918804 agaaagacgtcacactcttacccaaaaccttaagtcaataggtttatgggtcctcttacttataaagtgttcaacctttactctgctatctgatgtggga 8918903  T
Q  785 cat 787  Q
    |||    
T  8918904 cat 8918906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 695 - 788
Target Start/End: Complemental strand, 40518690 - 40518597
Alignment:
Q  695 cacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||| ||| || |||||  |||| |||||||| || |||| | |||||| |||||||||||| |||||| ||||||||||| ||||||    
T  40518690 cacactcttacccaaaaccttaagtcattgggtttatgggtcctcttatttataaggtgttcaacctttacttttctatctgatgtgggacata 40518597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 788
Target Start/End: Original strand, 45122092 - 45122200
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||| ||| |||||||||||||||| ||| || ||||| | | |  ||||||| ||||||| |||||||| |||||||||||| ||| || |||| ||||    
T  45122092 aagtaagagagacaccacactcttacccaaaaccttaagaaaatgagtttatgggttctcttacttataaggtgttcaacctttactattttatccgatg 45122191  T
Q  780 tgtgacata 788  Q
    || ||||||    
T  45122192 tgagacata 45122200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 689 - 762
Target Start/End: Original strand, 9483231 - 9483304
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaacctt 762  Q
    |||||||||||||||| ||| || ||||| ||| | |||||||| || |||| |||||||| ||||||||||||    
T  9483231 agacaccacactcttacccaaaaccttaagacaatgggtttatgggtcctcttacttataaggtgttcaacctt 9483304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 736 - 780
Target Start/End: Original strand, 4154371 - 4154415
Alignment:
Q  736 tctctaacttataaagtgttcaaccttcacttttatatctgatgt 780  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||||    
T  4154371 tctctcacttataaagtgttcaacctccacttttctatctgatgt 4154415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 781
Target Start/End: Original strand, 43274824 - 43274915
Alignment:
Q  690 gacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtg 781  Q
    |||||||||||||||  || || ||||| ||| |||||||||| || |||| ||||||||  | ||||||||| ||| || |||||||||||    
T  43274824 gacaccacactcttactcaaaaccttaagacaataggtttatgggtcctcttacttataatatattcaacctttactcttttatctgatgtg 43274915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 788
Target Start/End: Original strand, 45121954 - 45122053
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||| ||||||| ||| ||| ||||||||  || |  |||||||||| |||| ||||||||||||||||||||| ||| || |||  |||||| ||||||    
T  45121954 agacgccacactgttacccaaaatcttaaggcaatgagtttatgagtcctcttacttataaagtgttcaacctttactattttatgcgatgtgggacata 45122053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 788
Target Start/End: Original strand, 3038339 - 3038433
Alignment:
Q  694 ccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    ||||||||||| ||| || |||||  || | |||||||| || || | ||||||||||||||||||||| ||| || |||| |||||| ||||||    
T  3038339 ccacactcttacccaaaaccttaaggcaatgggtttatgggtccttttacttataaagtgttcaacctttactattttatccgatgtgggacata 3038433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 742 - 788
Target Start/End: Original strand, 4154763 - 4154809
Alignment:
Q  742 acttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||||||| ||||||| |||| |||||| ||||||    
T  4154763 acttataaagtgttcaacctccacttttctatcagatgtgggacata 4154809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 746 - 788
Target Start/End: Original strand, 20995502 - 20995544
Alignment:
Q  746 ataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||    
T  20995502 ataaagtgttcaacctccacttttttatctgatgtgagacata 20995544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 761
Target Start/End: Complemental strand, 27856254 - 27856173
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaacct 761  Q
    |||||||| |||||| ||||| ||||||| ||||||||  || | ||||||||||| ||||| ||||||  ||| |||||||    
T  27856254 aagtgagagagacacaacacttttatccaaaatcttaaggcagtgggtttatgagtcctctatcttatattgtgctcaacct 27856173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 781
Target Start/End: Original strand, 37544525 - 37544626
Alignment:
Q  680 aagtgagaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatg 779  Q
    |||| |||||||||||||||||||| ||| || ||||||  | | | |||||| || ||||  ||||||| |||||||||||| ||| || |||| ||||    
T  37544525 aagtaagaaagacaccacactcttacccaaaaccttaaagtaatggatttatgggtcctctttcttataatgtgttcaacctttactattttatccgatg 37544624  T
Q  780 tg 781  Q
    ||    
T  37544625 tg 37544626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 762
Target Start/End: Original strand, 40579550 - 40579623
Alignment:
Q  689 agacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaacctt 762  Q
    |||||||||||||||| | | || |||||| || || ||||||| || |||| |||||||| ||||||||||||    
T  40579550 agacaccacactcttacctaaaaccttaaagcaataagtttatgggtcctcttacttataaggtgttcaacctt 40579623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 726 - 787
Target Start/End: Original strand, 44358151 - 44358212
Alignment:
Q  726 gtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacat 787  Q
    ||||||||||  ||| ||||||||| || ||||| ||||||||| ||||||||||| |||||    
T  44358151 gtttatgagtcatctcacttataaaatggtcaacattcacttttttatctgatgtgagacat 44358212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 685 - 788
Target Start/End: Original strand, 554 - 657
Alignment:
Q  685 agaaagacaccacactcttatccacaatcttaaaacattaggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtga 784  Q
    |||||||||||||||||||| ||| || |||||  || | |||||||| || |||| |||||||| |||||||||||| ||| || || | |||||| ||    
T  554 agaaagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactcttttaaccgatgtggga 653  T
Q  785 cata 788  Q
    ||||    
T  654 cata 657  T

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Target: scaffold0171 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 788
Target Start/End: Original strand, 17536 - 17599
Alignment:
Q  725 ggtttatgagttctctaacttataaagtgttcaaccttcacttttatatctgatgtgtgacata 788  Q
    |||||||| || |||| ||||| || |||||||||||| ||| || ||||||||||||||||||    
T  17536 ggtttatgggtcctcttacttacaaggtgttcaacctttactattttatctgatgtgtgacata 17599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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