View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9498_4 (Length: 592)
Name: NF9498_4
Description: NF9498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9498_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 225 - 592
Target Start/End: Complemental strand, 6958665 - 6958298
Alignment:
| Q |
225 |
gattagagtatagtagagtaagtacctgaagagttgcatcaccactaattgtaactacagagtccacatcattgacaggctttgtcaaattggttcgaat |
324 |
Q |
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| T |
6958665 |
gattagagtatagtagagtaagtacctgaagagttgcatcaccactaattgtaactacagagtccacatcattgacaggctttgtcaaattggttcgaat |
6958566 |
T |
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| Q |
325 |
ctcaactttccattcagtcaacaaaagtttatggaatcacattacacctatgcctatttttcaagagtaagaccgacaattttcaagcagaattcaaact |
424 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6958565 |
ctcaactttccattcaatcaacaaaagtttatggaatcacattacacctatgcctatttttcaagagtaagaccgacaattttcaagcagaattcaaact |
6958466 |
T |
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| Q |
425 |
tcaaatgacactaaaaacctacaactattcctaccatattaccatccttataaaacataagccaaaaatcacaataacacttatattgatgtaatctaga |
524 |
Q |
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||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6958465 |
tcaaatgacactaaaaacctataactattcctaccaaagtaccatccttataaaacataagccaaaaatcacaataacacttatactgatgtaatctaga |
6958366 |
T |
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| Q |
525 |
aaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattacaatataatgttact |
592 |
Q |
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| T |
6958365 |
aaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattgcaatataatgttact |
6958298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 6958870 - 6958693
Alignment:
| Q |
30 |
ctattatgtgtaatgttcttctggaacctctttgtgctttcctattaataaagatagggtt---aatatattgaattcaaagaatatgctagctactgct |
126 |
Q |
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| T |
6958870 |
ctattatgtgtaatgtccttctgaaacctctttgtgctttactattaataaagatagggttctaaatatattgaattcaaagaatatgctagctactgct |
6958771 |
T |
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| Q |
127 |
cataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaatgataatatctacacgaac |
204 |
Q |
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| T |
6958770 |
cataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaatgataatatctacacgaac |
6958693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 30575232 - 30575384
Alignment:
| Q |
36 |
tgtgtaatgttcttctggaacctctttgtgctttcctattaataaagatagggtt---aatatattgaattcaaagaatatgctagctactgctcataaa |
132 |
Q |
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|||||||||| |||| |||| |||| |||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
30575232 |
tgtgtaatgtccttcaggaatctctctgtgttttcctgttaataaagatagggtcctgaatatattgaattcaaagaatatgctagctactgctcatgaa |
30575331 |
T |
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| Q |
133 |
tttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaa |
185 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30575332 |
tttgaagactttgatttcaattagttttcagcataaaacttcaatctttaaaa |
30575384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 23006964 - 23007116
Alignment:
| Q |
36 |
tgtgtaatgttcttctggaacctctttgtgctttcctattaataaagatagggtt---aatatattgaattcaaagaatatgctagctactgctcataaa |
132 |
Q |
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|||||||||| |||| ||||||||| |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| || |
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| T |
23006964 |
tgtgtaatgtccttcaggaacctctctgtgttttcctgttaataaagatagggtcctgaatatattgaattcaaagaatatgcttgctactgctcatgaa |
23007063 |
T |
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| Q |
133 |
tttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaa |
185 |
Q |
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|||| |||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
23007064 |
tttgaagactttgatttcaattagttttcggcataaaacttcaatctttaaaa |
23007116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 441
Target Start/End: Complemental strand, 31081843 - 31081743
Alignment:
| Q |
345 |
acaaaagtttatggaatcacattacacct-atgcctatttttcaaga---gtaagaccgacaattttcaagcagaattcaaacttcaaatgacactaaaa |
440 |
Q |
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||||||||||||||||||| | ||||| || |||||| ||||||| |||||||| |||||||| | ||||||| |||||||||||||||| |||| |
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| T |
31081843 |
acaaaagtttatggaatcatggtgcaccttattcctattattcaagaagtgtaagacctgcaattttctatcagaattaaaacttcaaatgacacaaaaa |
31081744 |
T |
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| Q |
441 |
a |
441 |
Q |
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| T |
31081743 |
a |
31081743 |
T |
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