View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9498_5 (Length: 591)
Name: NF9498_5
Description: NF9498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9498_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 14 - 591
Target Start/End: Complemental strand, 39234915 - 39234340
Alignment:
| Q |
14 |
agatgtatatgaaattttgatataaaaaacagaattaaattaaaatagatgaatagatacttgataaagtgcatcactctgaagtagagtcttgtgagca |
113 |
Q |
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| T |
39234915 |
agatgtatatgaaattttggtataaaaaacagaattaaattaaaatagatgaatagatacttgataaagtgcatcactctgaaggagagtcttgtgagca |
39234816 |
T |
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| Q |
114 |
agatctgcgtctccgatgagttggttttgttgttcctctccattattgatagccatctcttgtgttcttgtcttatttaatgnnnnnnnnn--actatga |
211 |
Q |
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| T |
39234815 |
agatctgcgtctccgatgagttggttttgttgttcctctccattattgatagccatctcttgtgttcttgtcttatttaatgtttttttttttactatga |
39234716 |
T |
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| Q |
212 |
aaagctctctttcgatgatgaagatttaaaactccaatttatagagaatgtgagtgtggtaacatagacaaatcctttcattctactatttaaaaatatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || |
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| T |
39234715 |
aaagctctctttcgatgatgaagatttaaaactccaatttatagagaatgtgagtgtggtaacatagacaaatcctttcattttactattgaaaaatgtt |
39234616 |
T |
|
| Q |
312 |
cttacagctaggaaggttctgtaagaattagctagaaatagattattttccatgaaactcaccaatattattatagcccttggaaccttttttggtcaag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39234615 |
cttacagctaggaaggttctgtaagaattagctagaaatagattatttgccatgaaactcaccgatattattatagcccttggaaccttttttggtcaag |
39234516 |
T |
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| Q |
412 |
ggcattgtttgacgttacttttgtaagcttgtgttgttgtcaaccaatagccagtgtgacatggtgcaaaacaaagttttttattcaactactatgctat |
511 |
Q |
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| T |
39234515 |
ggcattgtttgacgttacttttgtaagcttgtgttgttgtcaaccaatagccagtgtggcatggtgcaaaacaaagttttttattcaactactatgctat |
39234416 |
T |
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| Q |
512 |
agagattaaaatattaaatatcattcagtgactgatttccattaaagttttgtaattaaattactgaatcaacttgagac |
591 |
Q |
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| T |
39234415 |
agagattaaaatattaaatatcattcagtgactgatttccattaaaattttg----taaattactgaatcaacgtgagac |
39234340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 39053546 - 39053433
Alignment:
| Q |
75 |
tgataaagtgcatcactctgaagtagagtcttgtgagcaagatctgcgtctccgatgagttggttttgttgttcctctccattattgatagccatctctt |
174 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39053546 |
tgataaagtgcatcactctgaaggagagtcttgtgagcaagatctgtgtgtccaatgatttggttttgttgttcctctccattattgatagccatctctt |
39053447 |
T |
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| Q |
175 |
gtgttcttgtctta |
188 |
Q |
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| T |
39053446 |
gtgttcttgtctta |
39053433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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