View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9498_6 (Length: 568)
Name: NF9498_6
Description: NF9498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9498_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 15114541 - 15113972
Alignment:
| Q |
1 |
tgagatggataagaagtatgagaaatgggtgaaggagtggaatggtttgaggtatgtgagtccgtatgagaatggtgtgaatttgagtggt-cgagtgag |
99 |
Q |
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| T |
15114541 |
tgagatggataagaagtatgagaaatgggtgaaggagtggaatggtttgaggtatgtgagtccgtatgagaatggggtgaatttgagtggttcgagtgag |
15114442 |
T |
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| Q |
100 |
gaatcggataagtgggttgttggggttttacatgagattttgaatcttttggtgagtaaaaagacggagaaagataatgttttgatgattggtgagtggt |
199 |
Q |
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| T |
15114441 |
gaatcggataagtgggttgttggggttttacatgagattttgaatcttttggtgagtaaaaagacggagaaagataatgttttgatgattggtgagtggt |
15114342 |
T |
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| Q |
200 |
tgggtttagcatcgaggtttaagagggtgattttgcagcatccggggatattttatgtgtcgagtaagaataggatgtataccgttgttttgagagatgg |
299 |
Q |
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| T |
15114341 |
tgggtttagcatcgaggtttaagagggtgattttgcagcatccggggatattttatgtgtcgagtaagaataggatgtataccgttgttttgagagatgg |
15114242 |
T |
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| Q |
300 |
gtataagaggggtttgcttgttgaggataatccggcgatggagtttaggaggaggtatattcatttgatgaatactgttaaggaagatagcaagaacgat |
399 |
Q |
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| T |
15114241 |
gtataagaggggtttgcttgttgaggataatccggcgatggagtttaggaggaggtatattcatttgatgaatactgttaaggaagatagcaagaacgat |
15114142 |
T |
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| Q |
400 |
aagtctgagaaggggaaaacaagttcaaaagagggtagtttgaaagaggatgaaggtagatctgatgatgtcca-tctcattagaatcgcggggaggagg |
498 |
Q |
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| T |
15114141 |
aagtctgagaaggggaaaacaagttcaaaagagggtagtttgaaagaggatgaaggtaaggtagaagaggaagagtgtgacgagaatcgcggggaggagg |
15114042 |
T |
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| Q |
499 |
aagaggaagaggaagggagtgctgaggagtgttctgatgatgaagatgaggatgctagtgaaaccgtcga |
568 |
Q |
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| T |
15114041 |
aagaggaagaggaagggagtggtgaggagtgttctgatgatgaagatgaggatgctagtgaaaccgtcga |
15113972 |
T |
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