View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9498_7 (Length: 482)
Name: NF9498_7
Description: NF9498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9498_7 |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 21 - 454
Target Start/End: Complemental strand, 8290268 - 8289835
Alignment:
| Q |
21 |
catcatcacaggaggtgccagtggcatcggtgaagccacggcgcgtgtgtttgctaatgaaggcgccaaccatgttgtgattgctgacatccaagatgaa |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||||||||||| |||||||||||| |
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| T |
8290268 |
catcatcacaggaggtgccagtggcatcggtgaagccacggcgcatgtctttgctaacgaaggcgccagccatgttgtgattgctgatatccaagatgaa |
8290169 |
T |
|
| Q |
121 |
cttggcaatcaagtagctacgtccatcggcaaccaaaggtgcacctacatccactgcgatgtagcagacgaagatcaagtcaaaaatctcattcaatcaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8290168 |
cttggcaatcaagtagctacgtccatcggcaaccaaaggtgcacctacatccactgcgatgtagcagacgaagatcaagtcaaaaatctcattcaatcaa |
8290069 |
T |
|
| Q |
221 |
cggttaatacttatggacaggttcaaatatttcctatcctatatctttcaagggtgtctaactttttctattttcaaaatttttcgcattattatgagaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8290068 |
cggttaatacttatggacaggttcaaatatttcctatcctatatctttgaagcgtgtctaactttttctattttcaaaatttttcgcattattatgagaa |
8289969 |
T |
|
| Q |
321 |
aataaatattataagagaaatgaaattatgttattctcagaccaggtagatataatgttcaccaatgccggaatctttagtccaaccgatcaaactgtgt |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8289968 |
aataaatattataagagaaatgaaattatgttattctcacaccaggtagatataatgttcaccaatgccggaatctttagtccaaccgatcaaactgtgt |
8289869 |
T |
|
| Q |
421 |
tggaactcgacatgtcccaactagaccgtttatt |
454 |
Q |
| |
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| T |
8289868 |
tgaaactcgacatgtcccaactagaccgtttatt |
8289835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 28 - 243
Target Start/End: Complemental strand, 8257655 - 8257440
Alignment:
| Q |
28 |
acaggaggtgccagtggcatcggtgaagccacggcgcgtgtgtttgctaatgaaggcgccaaccatgttgtgattgctgacatccaagatgaacttggca |
127 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| | |||||||| || |||||||||||||| ||||| | |
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| T |
8257655 |
acaggaggtgctagtggcatcggtgaagccacggcacgtgtctttgctaatgaaggcgtgcgcgtggttgtgatcgccgacatccaagatgagcttggaa |
8257556 |
T |
|
| Q |
128 |
atcaagtagctacgtccatcggcaaccaaaggtgcacctacatccactgcgatgtagcagacgaagatcaagtcaaaaatctcattcaatcaacggttaa |
227 |
Q |
| |
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||||||||||| | ||||| |||| |||||||||||| ||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| | |
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| T |
8257555 |
atcaagtagctgcatccattggcagccaaaggtgcacttacatccactgcgatgtcacagatgaagatcaagtcaaaaacctagttcaatcaacggttga |
8257456 |
T |
|
| Q |
228 |
tacttatggacaggtt |
243 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
8257455 |
tacttatggacaggtt |
8257440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 8309549 - 8309333
Alignment:
| Q |
28 |
acaggaggtgccagtggcatcggtgaagccacggcgcgtgtgtttgctaatgaaggcgccaaccatgttgtgattgctgacatccaagatgaacttggca |
127 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| || || || |||||| | |||||||||||||||||||||||||| ||||| | |
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| T |
8309549 |
acaggaggtgctagtggcataggtgaagccacggcgcgtgtcttcgcgaacgaaggcacgcgtgtggttgtgattgctgacatccaagatgagcttggaa |
8309450 |
T |
|
| Q |
128 |
atcaagtagctacgtccatcggcaaccaaaggtgcacctacatccactgcgatgtagcagacgaagatcaagtcaaaaatctcattcaatcaacggttaa |
227 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||| || || || |||| ||||||||||| ||||||||| ||||||||||||| || |
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| T |
8309449 |
atcaagtagctgcgtccataggcaaccaaaggtgcacctacatccattgtgacgtgacagatgaagatcaagttaaaaatctcgttcaatcaacggtcaa |
8309350 |
T |
|
| Q |
228 |
tacttatggacaggttc |
244 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
8309349 |
tacttatgggcaggttc |
8309333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 28 - 245
Target Start/End: Complemental strand, 8260002 - 8259785
Alignment:
| Q |
28 |
acaggaggtgccagtggcatcggtgaagccacggcgcgtgtgtttgctaatgaaggcgccaaccatgttgtgattgctgacatccaagatgaacttggca |
127 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||| ||||| |||||||| ||||||| | |||||||| || |||||||||||||| ||||| | |
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|
| T |
8260002 |
acaggaggtgctagtggaatcggcgaagccacggcacgtgtctttgctaacgaaggcgtgcgcgtggttgtgatcgcggacatccaagatgagcttggaa |
8259903 |
T |
|
| Q |
128 |
atcaagtagctacgtccatcggcaaccaaaggtgcacctacatccactgcgatgtagcagacgaagatcaagtcaaaaatctcattcaatcaacggttaa |
227 |
Q |
| |
|
||||||||||| | ||||| |||| |||||||||||| |||||||| || ||||| ||||| ||||||||||||||||||||| ||| ||||||||| | |
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| T |
8259902 |
atcaagtagctgcatccattggcatccaaaggtgcacttacatccattgtgatgtggcagatgaagatcaagtcaaaaatctcgttcgatcaacggtaga |
8259803 |
T |
|
| Q |
228 |
tacttatggacaggttca |
245 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
8259802 |
tacttatggacaggttca |
8259785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 456
Target Start/End: Complemental strand, 8259524 - 8259431
Alignment:
| Q |
363 |
caggtagatataatgttcaccaatgccggaatctttagtccaaccgatcaaactgtgttggaactcgacatgtcccaactagaccgtttatttg |
456 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| ||||||| || |||||||| || ||||||| || ||||||||||| ||||||||||||| |
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| T |
8259524 |
caggtagatataatgttcagcaatgctggaatcgttagtcccacagatcaaacagtaatggaacttgatatgtcccaacttgaccgtttatttg |
8259431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 97 - 242
Target Start/End: Complemental strand, 8263002 - 8262857
Alignment:
| Q |
97 |
gtgattgctgacatccaagatgaacttggcaatcaagtagctacgtccatcggcaaccaaaggtgcacctacatccactgcgatgtagcagacgaagatc |
196 |
Q |
| |
|
|||||||| ||||||||||| || | ||||||||||| ||| | ||||| |||| | | |||||||||||| || || ||| ||||| | ||||||| |
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| T |
8263002 |
gtgattgccgacatccaagacgagttgggcaatcaagtggctgcatccattggcagtcgcaagtgcacctacattcattgtgatatagcaaatgaagatc |
8262903 |
T |
|
| Q |
197 |
aagtcaaaaatctcattcaatcaacggttaatacttatggacaggt |
242 |
Q |
| |
|
|||| ||||||||| |||||||||| || ||| ||||||||||||| |
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|
| T |
8262902 |
aagttaaaaatctcgttcaatcaactgtcaatgcttatggacaggt |
8262857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 8325497 - 8325364
Alignment:
| Q |
106 |
gacatccaagatgaacttggcaatcaagtagctacgtccatcggcaaccaaaggtgcacctacatccactgcgatgtagcagacgaagatcaagtcaaaa |
205 |
Q |
| |
|
|||||||||||||| | |||||| |||| ||| | || || |||| ||| ||||||||||| | || || |||||| | |||||||||||||||||| |
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| T |
8325497 |
gacatccaagatgagttgggcaatgaagtggctgcatctattggcagccacaggtgcacctatgttcattgtgatgtaacgaacgaagatcaagtcaaaa |
8325398 |
T |
|
| Q |
206 |
atctcattcaatcaacggttaatacttatggaca |
239 |
Q |
| |
|
||||| |||||||||| || |||||||||||||| |
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|
| T |
8325397 |
atctcgttcaatcaacagtcaatacttatggaca |
8325364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 456
Target Start/End: Complemental strand, 8257216 - 8257123
Alignment:
| Q |
363 |
caggtagatataatgttcaccaatgccggaatctttagtccaaccgatcaaactgtgttggaactcgacatgtcccaactagaccgtttatttg |
456 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| |||||| || |||||||| | ||||||| |||||||||||| | ||||||||||||| |
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| T |
8257216 |
caggtagatataatgttcagcaatgctggaatcgctagtcccactgatcaaacaatcatggaacttgacatgtcccaatttgaccgtttatttg |
8257123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 456
Target Start/End: Complemental strand, 8309010 - 8308890
Alignment:
| Q |
336 |
agaaatgaaattatgttattctcagaccaggtagatataatgttcaccaatgccggaatctttagtccaaccgatcaaactgtgttggaactcgacatgt |
435 |
Q |
| |
|
|||||||||||| ||||||||||| | ||| | ||||| ||||||| |||||| |||||| ||||| | || | |||||| | ||||||| || |||| |
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|
| T |
8309010 |
agaaatgaaattttgttattctcacaacagctggatatcatgttcagcaatgctggaatcattagttccacagctcaaacaataatggaacttgatatgt |
8308911 |
T |
|
| Q |
436 |
cccaactagaccgtttatttg |
456 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
8308910 |
cccaacttgaccgtttatttg |
8308890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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