View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9498_8 (Length: 439)
Name: NF9498_8
Description: NF9498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9498_8 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 26 - 429
Target Start/End: Complemental strand, 26856617 - 26856214
Alignment:
| Q |
26 |
cagactccaggaagagagttcttacttcgagtgtcatatctagaaatatacaatgaggtaaatccaaaacatttgtgttgcaccatctgtgttctgaaca |
125 |
Q |
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| T |
26856617 |
cagactccaggaagagagttcttacttcgagtgtcatatctagaaatatacaatgaggtaaatccaaaacatttgtgttgcaccatctgtgttctgaaca |
26856518 |
T |
|
| Q |
126 |
tgttttacagttctagtacttcatacaaccttagttctcccagctttacctgaactaaagtttcctgacatctgctactttgcgacatcgatattcccgt |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26856517 |
tgttttacagttctagtacttcatacaaccttagttctcccagctttacctgaactaaagtttcctgacatctgctactttgcgacaccgatattcccgt |
26856418 |
T |
|
| Q |
226 |
tccaattccatgttatatttatctaattttttcttctttaaattttccttgttaatagagatattttcatagtttatgtttggtttcaggtgataaatga |
325 |
Q |
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| T |
26856417 |
tccaattccatgttatatttatctaattttttcttctttaaattttccttgttaatagagatattttcatagtttatgtttggtttcaggtgataaatga |
26856318 |
T |
|
| Q |
326 |
cttgcttgacccaactggccaaaatttgcgtgttagagaagatgcgcaggtttcttacttaatctagcgttaattggaactgaaattttgtttatatttc |
425 |
Q |
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| T |
26856317 |
cttgcttgacccaactggccaaaatttgcgtgttagagaagatgcgcaggtttcttacttaatctagcgttaattggaactgaaattttgtttatatttc |
26856218 |
T |
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| Q |
426 |
tgtg |
429 |
Q |
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|||| |
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| T |
26856217 |
tgtg |
26856214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 54892641 - 54892581
Alignment:
| Q |
26 |
cagactccaggaagagagttcttacttcgagtgtcatatctagaaatatacaatgaggtaa |
86 |
Q |
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| T |
54892641 |
cagactccaggaagagaattcttactccgagtgtcatatctagaaatatacaacgaggtaa |
54892581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 54892406 - 54892331
Alignment:
| Q |
305 |
ttggtttcaggtgataaatgacttgcttgacccaactggccaaaatttgcgtgttagagaagatgcgcaggtttct |
380 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||| || || ||||||||| | ||||||||| |
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| T |
54892406 |
ttggtttcaggtgataaatgatttgcttgacccaactggtcaaaatttacgagtcagagaagattcacaggtttct |
54892331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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