View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9498_9 (Length: 418)
Name: NF9498_9
Description: NF9498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9498_9 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 36881829 - 36881597
Alignment:
| Q |
1 |
ttctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgcttaatcattctcattctcaatgtctcaacaataacgggttgtc |
100 |
Q |
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| T |
36881829 |
ttctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgcttaatcattctcattctcaatgtctcaacaataacgggttgtc |
36881730 |
T |
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| Q |
101 |
ttgacttcactgcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaattttgtctagaaattcgttaaccagttcaactat |
200 |
Q |
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| T |
36881729 |
ttgacttcactgcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaattttgtctagaaattcgttaaccagttcaactat |
36881630 |
T |
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| Q |
201 |
tccatttttcgctgcaaccaaaaatggtgtctc |
233 |
Q |
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| T |
36881629 |
tccatttttcgctgcaaccaaaaatggtgtctc |
36881597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 36892913 - 36892689
Alignment:
| Q |
1 |
ttctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgcttaatcattctcattctcaatgtctcaacaataacgggttgtc |
100 |
Q |
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| T |
36892913 |
ttctcatcctcatccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcattctca------aggtctcaacaataagaggttgcc |
36892820 |
T |
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| Q |
101 |
ttgacttcactgcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaattttgtctagaaattcgttaaccagttcaactat |
200 |
Q |
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| T |
36892819 |
tgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtacttttattagaatttcgttaaccatttcaactat |
36892720 |
T |
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| Q |
201 |
tccatttttcgctgcaaccaaaaatggtgtc |
231 |
Q |
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| T |
36892719 |
tccattttttgctgcaaccaaaaatggtgtc |
36892689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 293 - 408
Target Start/End: Complemental strand, 36881537 - 36881422
Alignment:
| Q |
293 |
gagttgatatggtttcctgtatctcattttgtttaggtttttgttcttgttcatcaaaccttttggtttcacctgccagtgacaaatgcaatggaaggtg |
392 |
Q |
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| T |
36881537 |
gagttgatatggttttctgtatctcattttctttaggtttttgttcttgttcatcgaacctattggtttcacctgccagtgacaaatgcaatggaaggtg |
36881438 |
T |
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| Q |
393 |
taaaaatgccattcat |
408 |
Q |
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| T |
36881437 |
taaaaatgtcattcat |
36881422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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