View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9498_low_2 (Length: 479)
Name: NF9498_low_2
Description: NF9498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9498_low_2 |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: scaffold0204 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 13347 - 12888
Alignment:
| Q |
18 |
cacagacgcagcggccgcaagaaggaaaacgaaacagatgcaaaccgaaacaacaaatccagcaaagaatatatctacaggaacccagtcacggcggcac |
117 |
Q |
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| T |
13347 |
cacacacgcagcggccgcaagaaggaaaacgaaacagatgcaaaccgaaacaacaaatctagcaaagaatagatctacaggaacccagtcacggcggcac |
13248 |
T |
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| Q |
118 |
gatttgaacgaatccaaaccggcggcgctaccgcctgaccaacacacggtgcgcctagagcttggactcccgacgaagccgtcgagagaacggagaggtg |
217 |
Q |
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| T |
13247 |
gatttgaacgaatccaaaccggcggcgctaccgtcggaccaacacacggtgcgcctagagcttggactcccgacgaagccgtcgagagaacggagaggtg |
13148 |
T |
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| Q |
218 |
atgcggatggcttactattgtcttggtatgtctaaaaagtcaaaaagcaacatgtaaataggta---agg--------nnnnnnnngtcaagaagcataa |
306 |
Q |
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| T |
13147 |
atgcggatggcttaccattgtcttggtatgtctaaaaagtcaaaaagcagcatgtaaataggcagagaggttttttttttttttttgtcaagaagcataa |
13048 |
T |
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| Q |
307 |
ttgttagaatttcatcaattattgt----nnnnnnnnnnnnntgaatttcatcaattaagattaataaatgaaaattttgaggtctgaattctagcccct |
402 |
Q |
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| T |
13047 |
ttgttagaatttcatcaattattgtaaaaaaaaaaaaaaaaaagaatttcatcaattaagattaataaatgaaaattttgaggtctaaattctagcccct |
12948 |
T |
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| Q |
403 |
acatattgcgttgtccttatcagttcagttgcggtcacagaaaataaaattgtactattt |
462 |
Q |
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| T |
12947 |
acatattgcgttgtccttatcagttcagttgcggtcacagaaaataaaattgtactattt |
12888 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 15853766 - 15853816
Alignment:
| Q |
99 |
aacccagtcacggcggcacgatttgaacgaatccaaaccggcggcgctacc |
149 |
Q |
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| T |
15853766 |
aacccagtcacggcggcacgatttgagtgaacccaaatcgtcggcgctacc |
15853816 |
T |
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