View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9498_low_3 (Length: 397)
Name: NF9498_low_3
Description: NF9498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9498_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 79 - 379
Target Start/End: Original strand, 1568695 - 1568995
Alignment:
| Q |
79 |
gaatcacataaaaaagtatgcacattatattgtccaaacaaaatgagagtgaaagccaaaggaaaaacgcaactaactcctagagatcaccttaaaagca |
178 |
Q |
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| T |
1568695 |
gaatcacataaaaaagtatgcacattatattgtccaaacaaaatgagagtgaaagccaaaggaaaaacgcaactaactcctagagatcaccttcaaagca |
1568794 |
T |
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| Q |
179 |
tgtcatatagtctcttgtcctaatttaacatcaaccttaagtcatctaaacggagaacacacaaccaggtgatatcagagatatatatattatagtaaac |
278 |
Q |
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| T |
1568795 |
tgtcatatagtctcttgtcctaatttaacatcaaccttaagtcatctaaacggagaacacacaaccaggtgatatcagagatatatatattatagtaaac |
1568894 |
T |
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| Q |
279 |
atgaaatactaataaacaaaatttacttgctggtctttttcagtaacaaaagaaagaacaacggaaagaaacgtgtcacagtacttcatagtaaatcacc |
378 |
Q |
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| T |
1568895 |
atgaaatactaataaacaaaatttacttgctggtctttttcagtaacaaaagaaagaacaacggaaagaaacgtgccacagtacttcatagtaaatcacc |
1568994 |
T |
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| Q |
379 |
t |
379 |
Q |
| |
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| |
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| T |
1568995 |
t |
1568995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 1561837 - 1561892
Alignment:
| Q |
279 |
atgaaatactaataaacaaaatttacttgctggtctttttcagtaacaaaagaaag |
334 |
Q |
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| T |
1561837 |
atgaaatactaataaacaaaatttacttgctggtctttttcaggaacaaaagaaag |
1561892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 2092292 - 2092347
Alignment:
| Q |
279 |
atgaaatactaataaacaaaatttacttgctggtctttttcagtaacaaaagaaag |
334 |
Q |
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| T |
2092292 |
atgaaatactaataaacaaaatttacttggtggtctttttcagaaacaaaagaaag |
2092347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 1560995 - 1561028
Alignment:
| Q |
231 |
gagaacacacaaccaggtgatatcagagatatat |
264 |
Q |
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| T |
1560995 |
gagaacacacaaccagctgatatcagagatatat |
1561028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 2091464 - 2091496
Alignment:
| Q |
232 |
agaacacacaaccaggtgatatcagagatatat |
264 |
Q |
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| T |
2091464 |
agaacacacaaccagctgatatcagagatatat |
2091496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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